Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0218 ATGACAGGGAAGAGAAATAACCAAACCAGTCCTGTGGGAAGCCCAACTTCTGGGAACATCTCAGACAGCTCTTCCAAAGAACAAGACAGGTTTCTTCCCATCGCCAACGTTAGCCGTATCATGAAAAGGGCACTTCCTGCTAATGCCAAAATCTCCAAGGAAGCGAAAGAGACGGTTCAAGAATGTGTGTCTGAGTTCATAAGCTTCATCACGGGTGAAGCGTCCGACAAGTGCCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATCTTCTGTGGGCCATGACAACGTTGGGGTTCGAGAACTATGTTGGACCCTTGAAGGTGTACCTCAACAACTACAGGGAAATAGAGGGAGACAAGACTTGTTTTGGTACTAAGCCAGAAGATCAGGTTCAGACAGAAACAAATGATGGGGTCGCTGAGATCAACAAGTTGGCTAATTCTGTGTCAGCCAAAGCAGATCTTGCCGGTTTCAACGGTGCGTTTTACTCTGTTATGTCTCAGGTTGCTCCAAAGAGCTTCACGGAGATAGGAGGGCTCACTGGCTTCAGAGAGAACCCCATGAACATGGCTATTGCCCAGAATGCGGTTCATCATGATGCAGATGGAAACCTGCGTTACAGGGTTGAATGGAAATGCAAGAATAAAGCTTTACTGAAGAAGAAGGAGGAGGCTTTGAATGTCTCCGAATTGCCATCTTCGTCATTGTCTCATCATTCATCTATGGTTGTGAGTGTGTCCTATAAACTACGAAACTCAAGAGTCCTAGTTCGCCGCAATCGGAGTGTTGTATCAGCGATTGGGCATCCTCTTGGAATGTCTTTGGCGGCTGTGCTGGCTGAGGTTTTGTACAGAAGAGATGCAGCAGCCGAAAGGATTTCTCCTGATTATCTCTCGGTGGTTTATCGAGACAAGCTAGATGGTTTAACGAGAAACTTTGAACAATCTTTTGGTAGCACTCTGAGGACTATTGGACTAATTTATGATTCATCTGCAATTAACAAAGGTAGTAACGATACTAACTTCAATAGTATAAGGATGGAAGTTCCAACTTCCAAATTTGCTCTTGACAAAGGATATTGCTCCAGGGATGTGGTCACAGAGGATGTTCATTCAAAGACAGTATCACGTACTGAAATCCCAGATCAATCGAGGCATGATGAAGAGGTCGAGGAGAACTTCCTATTGACCTAG 1197 0.4536 MTGKRNNQTSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYREIEGDKTCFGTKPEDQVQTETNDGVAEINKLANSVSAKADLAGFNGAFYSVMSQVAPKSFTEIGGLTGFRENPMNMAIAQNAVHHDADGNLRYRVEWKCKNKALLKKKEEALNVSELPSSSLSHHSSMVVSVSYKLRNSRVLVRRNRSVVSAIGHPLGMSLAAVLAEVLYRRDAAAERISPDYLSVVYRDKLDGLTRNFEQSFGSTLRTIGLIYDSSAINKGSNDTNFNSIRMEVPTSKFALDKGYCSRDVVTEDVHSKTVSRTEIPDQSRHDEEVEENFLLT 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0218 398 MobiDBLite consensus disorder prediction 378 398 - -
Lele19g0218 398 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele19g0218 398 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele19g0218 398 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele19g0218 398 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele19g0218 398 Gene3D Histone, subunit A 18 155 IPR009072 GO:0046982
Lele19g0218 398 MobiDBLite consensus disorder prediction 1 28 - -
Lele19g0218 398 SUPERFAMILY Histone-fold 28 140 IPR009072 GO:0046982
Lele19g0218 398 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele19g0218 398 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele19g0218 398 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0218 Lele-ChrLele19 1315028 1318188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0218 13 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.636 1.11e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele19g0218 CBFD_NFYB_HMF 3.4e-26 CL0012