LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g0211	ATGAATTCGACATCGACACAGTTTGTTTCCACAAGAAGGATGGGTGTATATGATCCTATCCACCAGATTAGCATGTGGGAAGAAGATTTCAAAAGTAATTGTAATTTAAGTGCATCGGTGCCCTTATTTGGTGAGGCAGATGTGAAGGTAGATAGTCAGTCAGAGGATTCTTCTCATGGAATGCTTGGAATTCCAAAGAACTATGACCAAGAAGCTAACAAGTCTATTGAAAAGATACAAAGACGCCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTGCGGAAGAAGGCTTATGTTCAGCAATTAGAATCAAGTCGTATGAAGCTGATCAAGTTAGAGCAAGAACTGGACCGTGCAAGACAGCAGGGATCTTTTATAGGCTGTGGATTGGATTCTGATAATTTGGTATTTCCTGGATCTGTAAATTCAGGCATTGCAACCTTTGAGATGGAGTATGGGCACTGGGTAGATAAACAAAATAGACAAATTTGTGAGCTGAGAACTGCTTTAAATGCTCATATCAGTGACATAGAACTCAGAATACTTGTAGATGGTATAATGAATCACTATTCTGACCTTTTCCGCATGAAATCAGCAGCCGCAAAAGTCGATGTTTTCTATGTTTTGTTTGGCATGTGGAAAACAACTGCTGAACGGTTTTTCTTGTGGATTGGAGGATTCCGCCCATCTGAGCTTCTCAAGGTTCTTGTCCCTTTGATCGAACCTTTGACAGAACAACAACGAATGGATGTTTATAACCTTGAACAATCATGCCAGCAAGCAGAAGATGCCCTTTCACAAGGCAGGGACAGACTTCAGCAGATACTAGTTGAAAATGTCGCCGCCGGACAACTGGTCGACGGAACTTACATTCCTCAGATGGCTACTGCGGTGGAGAAGCTGGAAGCTTTGGTGAGCTTTGTGAACCAGGCCGATCATCTTCGGCAGGAAACTTTGCAACAAATGTTTCGAATCCTTACAATTCGTCAGGCAGCTCGGTGGTTGCTTGCTTTAGGGGAATACTTCCAACGCTTGCGGGCTTTGAGCTCTCTTTGGGCGAATCGTCCTTCCGAACCACCTGCTTAG	1092	0.4368	MNSTSTQFVSTRRMGVYDPIHQISMWEEDFKSNCNLSASVPLFGEADVKVDSQSEDSSHGMLGIPKNYDQEANKSIEKIQRRLAQNREAARKSRLRKKAYVQQLESSRMKLIKLEQELDRARQQGSFIGCGLDSDNLVFPGSVNSGIATFEMEYGHWVDKQNRQICELRTALNAHISDIELRILVDGIMNHYSDLFRMKSAAAKVDVFYVLFGMWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRMDVYNLEQSCQQAEDALSQGRDRLQQILVENVAAGQLVDGTYIPQMATAVEKLEALVSFVNQADHLRQETLQQMFRILTIRQAARWLLALGEYFQRLRALSSLWANRPSEPPA	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g0211	363	Pfam	Seed dormancy control	164	239	IPR025422	GO:0006351\|GO:0043565
	Lele19g0211	363	PANTHER	TRANSCRIPTION FACTOR TGA9	1	360	-	-
	Lele19g0211	363	Coils	Coil	97	124	-	-
	Lele19g0211	363	SMART	brlzneu	74	138	IPR004827	GO:0003700\|GO:0006355
	Lele19g0211	363	Gene3D	-	76	126	-	-
	Lele19g0211	363	FunFam	BZIP family transcription factor	77	126	-	-
	Lele19g0211	363	CDD	bZIP_HBP1b-like	78	129	-	-
	Lele19g0211	363	Pfam	bZIP transcription factor	78	113	IPR004827	GO:0003700\|GO:0006355
	Lele19g0211	363	SUPERFAMILY	Leucine zipper domain	78	116	IPR046347	GO:0003700\|GO:0006355
	Lele19g0211	363	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	81	96	IPR004827	GO:0003700\|GO:0006355
	Lele19g0211	363	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	76	118	IPR004827	GO:0003700\|GO:0006355
	Lele19g0211	363	ProSiteProfiles	DOG1 domain profile.	147	357	IPR025422	GO:0006351\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g0211	Lele-ChrLele19	1278573	1280643	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele19g0211	1	361	Calmodulin-binding Proteins	AT5G10030	69.421	0.0	516

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele19g0211		DOG1	6.8e-31	No_clan