Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0205 ATGAAAAATCTCTCTGATTTCTTCTTTCATCTCTACGCAAAGACCATCGTGTTGGTGGTCTTCCTGCTGATAGAACTCATCATCCTCATTCGAAACCTAAGAACACACACCCCTCCAATTACCATCTCCCAGTACCTCCAACTCATCGAAGCTAATAACCCTACCGTTTGTTTTACCAGAACTCTGAACATGGCCGACCAACTAGAGTGCAGGGTTTGCTTATCTGAGCTTCAAGAAGGCGACAAAGTTAGGAACTTGAAGTGTAAACACACATTTCACAAGGAATGCTTGGACCGGTGGTTGCTTCAGTTTTGGGCCACTTGTCCTCTCTGTAGGAACAAAGTCCTACCAGAAGATGTCGTTACCAATTATCGGCGGCTACGGAATCAGAGGGAATTGATCATCTTTCCATTCTGGGATTCCTTGGAAGATTAG 435 0.446 MKNLSDFFFHLYAKTIVLVVFLLIELIILIRNLRTHTPPITISQYLQLIEANNPTVCFTRTLNMADQLECRVCLSELQEGDKVRNLKCKHTFHKECLDRWLLQFWATCPLCRNKVLPEDVVTNYRRLRNQRELIIFPFWDSLED 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0205 144 Pfam Ring finger domain 69 112 IPR001841 -
Lele19g0205 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 117 IPR013083 -
Lele19g0205 144 PANTHER - 1 131 - -
Lele19g0205 144 SMART ring_2 70 111 IPR001841 -
Lele19g0205 144 CDD mRING-H2-C3H2C2D_ZSWM2 69 112 - -
Lele19g0205 144 SUPERFAMILY RING/U-box 55 118 - -
Lele19g0205 144 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0205 Lele-ChrLele19 1257044 1257650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0205 69 126 C3H Transcription Factor Family AT1G15100 53.448 8.23e-19 75.9