Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0180 ATGGGAAGATCACCATGCTGTGATGAGATTGGTTTGAAGAAAGGCCCTTGGACTCCTGAAGAAGATCTGAAGCTTGTTAACTTCATTCAAGAGCATGGTCATAGGAGCTGGAGAGCCCTTCCAAAACTAGCAGGGCTGAACAGGTGTGGGAAAAGTTGCAGGCTACGATGGACGAATTACTTGAGGCCTGACATAAAGAGAGGGAAATTTTCTCAAGAAGAACAAGAAGCAATTCTGAATCTCCATGCTATGCTTGGAAACAAATGGTCGGCGATTGCAAGCCAGCTACCGGGACGGACAGATAACGAGATCAAGAATTTCTGGAACACCCATCTAAAGAAGAAGCTGATCCAAATGGGTTATGATCCGTTGACACACCAGCCTCGAACTGATATTTTCTCAAGTTTGCCTCATCTCGTAGCACTGGCTAATCTCACAGGACTGTTGGACCATCAACCATGGCAACAGAATGTTGCTTTGAAACTGCAAGAAGAGGCTGTTCAATTTGCCAGACTTCAAGGCTTACAAAATCTCTTGCACCCTCAGCCTCAACCTTCTCCAACTGAACCCAACTTAAACCCTGACTTCACGAACAACTTGGATACCATTAATATTGATCTTCTGAAGTTCCTGAATCCAACAAACAACAGCGCGGCTTTAAGTTCAACCCAGTTGGAAAACAATAATGATATAAATAATCCACCTCCAATCGTAGTCAAAAATCTCCAATTGGGCTATGACTCGTTCTCTAACATGCCAGGGTTGAAATCGCCACGTAACTATCATCAACCACCATCGTCGTTAAGTCAGGGAGAAAGTTCTCCCAATTCACCGTGGCTTCTTTCATTCTCAAGCGGCACTGTTCCGTATTCTTCTACTGTGCCAGAGATTTCAATGACAAATACTGTTAATCATGGAGATGTGGGTCCTTCCACGTCGCCCGACCTTCTGCTGGAGGACTACCCTTTGTTCCATGAGATTTCCTAG 987 0.4468 MGRSPCCDEIGLKKGPWTPEEDLKLVNFIQEHGHRSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEQEAILNLHAMLGNKWSAIASQLPGRTDNEIKNFWNTHLKKKLIQMGYDPLTHQPRTDIFSSLPHLVALANLTGLLDHQPWQQNVALKLQEEAVQFARLQGLQNLLHPQPQPSPTEPNLNPDFTNNLDTINIDLLKFLNPTNNSAALSSTQLENNNDINNPPPIVVKNLQLGYDSFSNMPGLKSPRNYHQPPSSLSQGESSPNSPWLLSFSSGTVPYSSTVPEISMTNTVNHGDVGPSTSPDLLLEDYPLFHEIS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0180 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele19g0180 328 Gene3D - 13 66 - -
Lele19g0180 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele19g0180 328 FunFam MYB transcription factor 68 129 - -
Lele19g0180 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele19g0180 328 FunFam MYB-related transcription factor 13 66 - -
Lele19g0180 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele19g0180 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele19g0180 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele19g0180 328 MobiDBLite consensus disorder prediction 251 279 - -
Lele19g0180 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele19g0180 328 Gene3D - 68 131 - -
Lele19g0180 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Lele19g0180 328 CDD SANT 16 61 IPR001005 -
Lele19g0180 328 SMART sant 13 63 IPR001005 -
Lele19g0180 328 SMART sant 66 114 IPR001005 -
Lele19g0180 328 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0180 Lele-ChrLele19 1064496 1065676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0180 1 289 MYB Transcription Factor Family AT5G10280 53.055 3.94e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele19g0180 Myb_DNA-binding 3.6e-16 CL0123