Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0175 ATGAGGTCCTGTATGACAGACAGGATTAAGTCATCTGGCTTCAGTGGTATAAGCAGGGTAAGCTTTATGGCTGCCCCAAGTTCAAGCTTTTTTGGTCGCGATTCCTTGCATGCGCTCTATGAACTGGGTTCTTCTCAAACTTTTCATCATCGCAGGGGATCAAGGTTAATAGTTAGAGCAGATTTGGATTACTATTCTGTCCTTGGGGTGTCAAGAAATGCTAGTAAATCTGAAATTAAAACTGCTTATCGGAAGCTTGCCCGGAATTATCACCCAGATGTGAATAAAGAACCTGGCGCAGAACAGAAGTTTAAGGAAATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATAGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGACTCTGTTTGAGGGTATGAATCGTGGATCCAGAGGTTCCTGGAATGGAGCTCTTGATGGTGAAGATGAGTACTATAGTCTTGTCTTGAACTTTAAGGAAGCAGTTTTTGGAGTAGAAAAAGAGATAGAGATCAGCCGGCTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCAAAACTGGGAACCAAGCCGACCAGATGCAGCACTTGTGGGGGTCAAGGTAGGGTTGTCTCATCAACAAGGACACCATTAGGTATTTTTCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATCTCAACACCATGCAATACATGTTCTGGGGATGGTAGAGTGCGGAGGACAAAACGGATAAGTCTGAAAGTCCCAGCTGGCGTAGACTCTGCTAGTCGTTTGAGGGTACGAAATGAAGGAAATGCTGGAAGGCGCGGTGGTGCTCCTGGTGACCTTTTTGTTGTTATTGAAGTTATGCCCGACCCAGTACTTAAACGCGATGACACCAACATTTTATACACTTGCAAGGTGTCATACACAGATGCAATCTTGGGAACTACTGTCAAGGTTCCTACTGTAGATGGCAAGGTGGATTTAAAAATCCCTGCTGGGACCCAACCGAACACAACACTTCTTATGGCTAGAAAAGGTGTTCCCCTGCTGAACAAGAGCAGTATGAGGGGTGATCAGTTGGTTCGGGTGCAAGTTGAAATCCCCAAAAAGTTGAGCAGCGATGAGAGGAAGCTTATTGAAGAACTTGCTGATTTAAGCAAGGGCAAGACTGCGACGGGTAAGAGATAA 1251 0.45 MRSCMTDRIKSSGFSGISRVSFMAAPSSSFFGRDSLHALYELGSSQTFHHRRGSRLIVRADLDYYSVLGVSRNASKSEIKTAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGIGMGDFSNPFDLFETLFEGMNRGSRGSWNGALDGEDEYYSLVLNFKEAVFGVEKEIEISRLESCGTCNGSGAKLGTKPTRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRRTKRISLKVPAGVDSASRLRVRNEGNAGRRGGAPGDLFVVIEVMPDPVLKRDDTNILYTCKVSYTDAILGTTVKVPTVDGKVDLKIPAGTQPNTTLLMARKGVPLLNKSSMRGDQLVRVQVEIPKKLSSDERKLIEELADLSKGKTATGKR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0175 416 CDD DnaJ_zf 199 262 IPR001305 GO:0031072|GO:0051082
Lele19g0175 416 CDD DnaJ 63 116 IPR001623 -
Lele19g0175 416 SMART dnaj_3 62 119 IPR001623 -
Lele19g0175 416 Gene3D DnaJ domain 61 164 IPR036869 -
Lele19g0175 416 Pfam DnaJ central domain 199 262 IPR001305 GO:0031072|GO:0051082
Lele19g0175 416 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 33 413 - -
Lele19g0175 416 FunFam Molecular chaperone DnaJ 191 267 - -
Lele19g0175 416 Gene3D - 199 262 - -
Lele19g0175 416 Gene3D - 309 415 - -
Lele19g0175 416 FunFam Chaperone protein dnaJ 1, mitochondrial 309 416 - -
Lele19g0175 416 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Lele19g0175 416 CDD DnaJ_C 170 392 - -
Lele19g0175 416 Gene3D - 169 304 - -
Lele19g0175 416 Pfam DnaJ C terminal domain 174 389 IPR002939 -
Lele19g0175 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 322 IPR008971 GO:0006457|GO:0051082
Lele19g0175 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 314 400 IPR008971 GO:0006457|GO:0051082
Lele19g0175 416 FunFam Putative Mitochondrial DnaJ chaperone 254 304 - -
Lele19g0175 416 Hamap Chaperone protein DnaJ [dnaJ]. 60 412 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele19g0175 416 Pfam DnaJ domain 63 124 IPR001623 -
Lele19g0175 416 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 186 265 IPR036410 -
Lele19g0175 416 PRINTS DnaJ domain signature 83 98 IPR001623 -
Lele19g0175 416 PRINTS DnaJ domain signature 65 83 IPR001623 -
Lele19g0175 416 PRINTS DnaJ domain signature 119 138 IPR001623 -
Lele19g0175 416 PRINTS DnaJ domain signature 99 119 IPR001623 -
Lele19g0175 416 TIGRFAM DnaJ_bact: chaperone protein DnaJ 63 405 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele19g0175 416 ProSiteProfiles dnaJ domain profile. 63 127 IPR001623 -
Lele19g0175 416 SUPERFAMILY Chaperone J-domain 60 156 IPR036869 -
Lele19g0175 416 FunFam Chaperone protein dnaJ A6 chloroplastic 60 163 - -
Lele19g0175 416 ProSiteProfiles Zinc finger CR-type profile. 186 267 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0175 Lele-ChrLele19 1035478 1038528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0175 64 126 C2H2 Transcription Factor Family AT1G74250 42.029 4.16e-09 56.6