Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0114 ATGTATAACGGCGATCCTAATTTCGGTGAAGAAGATGCCAAGAGCTACGCTCTTAGCGGCAGGATTATGCTTAGCGCCGTCGTCATTTTATTCTTCATCGTCATTCTTATGATTTGCCTTCACCTGTACGTTCGCTGGTTTCACTCACAAGCTCGCCGCCGTCATCGCCGCCGCCGTCGCGCTCACATCGTATTCTACGCGGACTCCGCCACTCCTGCTGTGGCCTCGTCGCGTGGTCTCGATTCGTCTCTACTCATGTCTCTCCCTGTCTTCGTCTACTCTTCTAACACTCACCCGGAACAGATTGAATGCCCAGTCTGCTTGTCCGAGTTCGAAGGGGGCGAGACGGGTCGAGTTTTGCCCAAATGCAATCACACTTTTCACGTTGACTGCATCGACATGTGGTTCCAGACCCACTCCACATGCCCCATTTGCAGGGCTGCTGTTGAACCCGCACCGGTGGACACCAACCGTCCTGAAGTGGTGATAACAGTGGGTGAACCTGAAATTTCTGAACCAGGGTCGACTTCTGGGCTGTGTTCGGAGTGTCAGCACGAAGGGAGGGATGAAACCCGAAGCAGCCATATGGTTTGTTCTTCGTCATCTTCTTCGATCGGGTTAGGGCGCAAGCCATCCTCACTAGTAGGTGTAACCCTAGAGGTGCCCAAGAGAGGTGAGAGCTTCGGAGACGAGCCGGCGTGCGAGTCGCCGTCGACTCAGTCATCGTTCAGGTCACCTATGAGTCGCATGATGTCGTTCAAGAGGATGCTCAGCAGAGACCGGAAAGCAAACCTTTCGCCATCGGCAGGGAGTAGTACGGCCGGGGGCAGCAGCTCTGGGAACGAGTTCGAGAAGGAAGGAGGAGGACGAGAGGGGACACAATGA 885 0.548 MYNGDPNFGEEDAKSYALSGRIMLSAVVILFFIVILMICLHLYVRWFHSQARRRHRRRRRAHIVFYADSATPAVASSRGLDSSLLMSLPVFVYSSNTHPEQIECPVCLSEFEGGETGRVLPKCNHTFHVDCIDMWFQTHSTCPICRAAVEPAPVDTNRPEVVITVGEPEISEPGSTSGLCSECQHEGRDETRSSHMVCSSSSSSIGLGRKPSSLVGVTLEVPKRGESFGDEPACESPSTQSSFRSPMSRMMSFKRMLSRDRKANLSPSAGSSTAGGSSSGNEFEKEGGGREGTQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0114 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Lele19g0114 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 171 - -
Lele19g0114 294 SUPERFAMILY RING/U-box 85 152 - -
Lele19g0114 294 MobiDBLite consensus disorder prediction 233 248 - -
Lele19g0114 294 FunFam RING-H2 finger protein ATL3 71 151 - -
Lele19g0114 294 Pfam Ring finger domain 103 146 IPR001841 -
Lele19g0114 294 CDD RING-H2_EL5_like 103 146 - -
Lele19g0114 294 MobiDBLite consensus disorder prediction 264 280 - -
Lele19g0114 294 MobiDBLite consensus disorder prediction 171 204 - -
Lele19g0114 294 MobiDBLite consensus disorder prediction 223 294 - -
Lele19g0114 294 SMART ring_2 104 145 IPR001841 -
Lele19g0114 294 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0114 Lele-ChrLele19 721187 722071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0114 5 291 Rapid Response to Elicitors AT3G16720 51.140 5.46e-75 230