Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0032 ATGGGATTCTGTGTAGAGGAGTCAATATCAGGCCTGACATTAGGCCAGGCAATATATGAGGCCGCTCTGATAATTGCAGTTCTGAGATGGGTATTTTGCTGGGTTTCCAAAGTCATCAATGATCGGAGAAGCCAGGCATCATCAGAAAACGCTTCCTCTTCTTCTTCTTGGGTGTGCTGCCAGATGATAAGGGACAGTACTCTGACACTTAGGACCTTTGGCGAAATGGTGGAAAGAGTGCCAGAAACAGAGGATACGTGTGCCGTGTGCTTGAACCAGTTAACAATGGAGGACAAAGTTAGAGAGCTCATGAACTGTGACCATGTATTTCACAGAGAATGCATAGACACATGGTTGGATCACGATCATGACAATCTCAACCCCACTTGCCCGCTCTGCAGAGCTCCTGTGCTTTCTTGCTATTCTTCATCTGATTCAGAAGGCCCTGGCTGCATGCCACCCTCTCACCCTAGCTGGGCTGTGGAGAGGCTTCTCTATCTCTTCGGGGACGATCTGCCCCTTTGCTGA 528 0.4886 MGFCVEESISGLTLGQAIYEAALIIAVLRWVFCWVSKVINDRRSQASSENASSSSSWVCCQMIRDSTLTLRTFGEMVERVPETEDTCAVCLNQLTMEDKVRELMNCDHVFHRECIDTWLDHDHDNLNPTCPLCRAPVLSCYSSSDSEGPGCMPPSHPSWAVERLLYLFGDDLPLC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0032 175 ProSiteProfiles Zinc finger RING-type profile. 87 134 IPR001841 -
Lele19g0032 175 SUPERFAMILY RING/U-box 82 140 - -
Lele19g0032 175 Pfam Ring finger domain 85 134 IPR001841 -
Lele19g0032 175 SMART ring_2 87 133 IPR001841 -
Lele19g0032 175 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 171 - -
Lele19g0032 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0032 Lele-ChrLele19 239294 239821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0032 1 172 C3H Transcription Factor Family AT5G20885 44.809 4.41e-40 132