Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0003 ATGATTTTCCTAATATTTTGCCAACTTCTCCTAAATCTTTTAATTATTTTTGCCATCGGATCCTTTCTGGGTCCTTTCGTGTCATTTTCCCCGAGCACCGACCTATCCAAGATATCATCTGCAGCCTCATGGCCCCTGGGAGATGAGACACTGCCGTTCCGCCTGCATAGCTCTTCATCTATGGCGTCTGCTTTTTCAACGATGTCAAATGTCGGGTCTTTGCTGAGTCCACTAAGCGGCACTCAGACCAGAGTTATGTATCCTATGAATAGTGCTAGTTCATTTAAGCTCGCGGGATTTCCTACGCGATCGAATATATGCTTCTCATCGAGCGCCTTTGTCTGTTCGTTGCATTTGGTGCCTTCCTCTTCTTCTTGGAATGCTTCTTCCCAACAAAGAACGCGTTTTAGCATCTTTGTTCGGGCCAGTTCTGAGGAAGGACCTTTACAATCAAAAATTACTCACAAGGTGTATTTTGACATAAGTATTGGAAATCCTGTGGGGAAGCTTGCTGGAAGGATTGTGATTGGACTCTATGGTGATGATGTGCCCCAAACAGTAGAGAACTTCCGTGCCCTTTGCACAGGAGAGAAGGGCTTTGGGTACAAAGGTTCTACATTCCATCGTGTAATAAAGGATTTCATGATTCAGGGAGGGGACTTTGACAAGGGGAATGGAACTGGAGGTAAAAGTATTTATGGCCGCACATTCAAAGATGAGAATTTCAAGTTGTGTCATGTAGGACCAGGAGTTGTTAGCATGGCAAATGCAGGCCCCAACACCAATGGGAGCCAATTCTTTATATGCACCGTCAAGACACCCTGGCTGGATCAGAGGCATGTGGTATTTGGCCAAGTTTTGGAAGGTATGGACATTGTTAGGTTAATTGAATCACAGGAAACAGATCGAGGTGACCGTCCGAGGAAGAAGGTGGTTATCATTGACTCTGGTGAGCTTCCTATAGCTTGA 969 0.452 MIFLIFCQLLLNLLIIFAIGSFLGPFVSFSPSTDLSKISSAASWPLGDETLPFRLHSSSSMASAFSTMSNVGSLLSPLSGTQTRVMYPMNSASSFKLAGFPTRSNICFSSSAFVCSLHLVPSSSSWNASSQQRTRFSIFVRASSEEGPLQSKITHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLCHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVIIDSGELPIA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0003 322 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 169 316 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 202 219 IPR020892 GO:0003755|GO:0006457
Lele19g0003 322 SUPERFAMILY Cyclophilin-like 151 319 IPR029000 -
Lele19g0003 322 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 156 319 - -
Lele19g0003 322 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 168 318 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 Gene3D - 142 321 IPR029000 -
Lele19g0003 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 278 293 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 250 265 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 265 277 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 193 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 219 IPR002130 GO:0000413|GO:0003755
Lele19g0003 322 CDD cyclophilin_ABH_like 155 317 - -
Lele19g0003 322 FunFam Peptidyl-prolyl cis-trans isomerase 142 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0003 Lele-ChrLele19 28809 35857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0003 172 316 U-box Gene Family AT5G67530 48.630 3.43e-35 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1569 17 24029443 24038298 Lele19g0003 19 28809 35857 hybridization
Lele18g0003 18 36496 45408 Lele19g0003 19 28809 35857 hybridization