Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0002 ATGCCGAAAAACAGAAGAGATATTGAAATTTTGAAATTTCTCCTCTTAAAGAGTCAGCGCCCAGTCTGCTTACTAGGTCAGTTTGTGGATAAGTGGCAGTCTGACAGTAAATCTAAAAGGGAAAGTTGGAGGACAGAGTTACCAAGGGCAGGACTAGGGATGGAAGTTCTTGAGAAGATGAGAGATGAGAAAAGAAATGATGTGATTTGGCAAGGCAAATGCTCTGGTACAGTGTTTGCACATACCAATCCCTTGCATTTGGATGTATTTCAAAGTGTTGTACGTTTTGAGGCAGAAGTGGTTGCAATGACAGCTGCACTTCTTGGAAGTAAAGAAAAGGGTTCGAGGGGACAAATTTGTGGAAATATGACATCGGGAGGGACTGAAAGTATATTATTAGCTGTCAAATCATCACGTGACTATATGAAGTCTAAAAAGGGAATTACAAGACCTGAAATGATAATACCTGAGTCTGCACACTCAGCATATGACAAGGCTGCTCAATACTTTAACATCAAACTCTGGCGCATTCCTGTTAACAAAAGATTTCAAGCAGATCTGAAAGCAATTCGATGTCATATTAACAAAAATACCATCTTGATCGTTGGTTCGGCACCTGGATTTCCTCATGGAATAATTGACCCCATTGAAGAACTTGGTGACCTGGCATCAAGCTTTGGAATTTGCTTTCATGTTGACCTCTGTCTTGGTGGCTTCGTGTTGCCTTTTGCTCGCAAGCTTGGGTACTCCATTCCACCTTTTGACTTTTCTGTTAAAGGAGTTTCTTCAATATCAGTGGACGTGCACAAATATGGTTTAGCTCCTAAAGGAACAAGTATAGTACTATACAGGAACCATGACATCAGAAAGCATCAGTTTGTTGCTGTTACTGAGTGGTCTGGTGGGTTGTATGTTTCTCCAACCATGGCTGGAAGCAGGCCTGGAGGTCTTATTGCTGGGGCTTGGGCAGCAATGATGTCCTTAGGGGAAGAAGGTTACATGGAGAATACAAAAGCAATTATGGATGTTTCAAAAAGAATACAGGAAGGCATAGGAGAGATTCCAGAATTATTCATAGTTGGAAGACCGGACATGACAATTGTGGCTTTTGGATCTGATTTTCTAGACATATTCGAAGTCAATGATATAATGTCATCCAGAGGATGGCATTTGAATGCACTGCAGAGACCAAACAGCATCCATGTCTGCGTGACACTGCAGCATTTGGCGGTTGTTGAAGACTTCCTCAGGGATTTAAAGGAATCTGTGATAACAGTAAAAGAAAATCCTGGTCCAGTGAGTGGAGGATTAGCACCTATATATGGTGCGGCAGGGAAGATGCCTGATAGAGGTATGGTACAGGAATTGCTGGTAGATTTCATGGACCGTACCTGCTAG 1398 0.4206 MPKNRRDIEILKFLLLKSQRPVCLLGQFVDKWQSDSKSKRESWRTELPRAGLGMEVLEKMRDEKRNDVIWQGKCSGTVFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKGSRGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESAHSAYDKAAQYFNIKLWRIPVNKRFQADLKAIRCHINKNTILIVGSAPGFPHGIIDPIEELGDLASSFGICFHVDLCLGGFVLPFARKLGYSIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHDIRKHQFVAVTEWSGGLYVSPTMAGSRPGGLIAGAWAAMMSLGEEGYMENTKAIMDVSKRIQEGIGEIPELFIVGRPDMTIVAFGSDFLDIFEVNDIMSSRGWHLNALQRPNSIHVCVTLQHLAVVEDFLRDLKESVITVKENPGPVSGGLAPIYGAAGKMPDRGMVQELLVDFMDRTC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0002 465 Gene3D - 78 329 IPR015421 GO:0003824
Lele19g0002 465 FunFam sphingosine-1-phosphate lyase 1 68 329 - -
Lele19g0002 465 Gene3D Aspartate Aminotransferase, domain 1 330 428 IPR015422 GO:0003824
Lele19g0002 465 Gene3D - 429 463 - -
Lele19g0002 465 PANTHER - 34 465 - -
Lele19g0002 465 SUPERFAMILY PLP-dependent transferases 32 426 IPR015424 -
Lele19g0002 465 FunFam Sphingosine-1-phosphate lyase 1 426 464 - -
Lele19g0002 465 Pfam Pyridoxal-dependent decarboxylase conserved domain 93 370 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0002 Lele-ChrLele19 17280 25966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0002 81 425 Calmodulin-binding Proteins AT3G17760 26.087 2.57e-24 103