Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1417 ATGTTGTGGGAACTCAAAAGCAAACTCTCGTGGCCTTGCTTTCCAAGCTCACGCAGGCGTATTTCACTAGCATACCATAGGCGTTGTTCTTGCCCAATTTTCCTGTTTCGATATCCACCTCTCATCACAGTCACTGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAATTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTCGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGGTTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTGAGATGCGGCTCAAGTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGGGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACTGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGTTCGAGAAGAATTTGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGTGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCAGTCTACAACACAGATCTTCCATCAAATGCAACCCCGAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATCGAATCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCGTGGCCATGGATGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAAAAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGACGTCCATCTTATTGAAGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCGACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCACCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGAGTGAACCGAATGGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTGTGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3384 0.435 MLWELKSKLSWPCFPSSRRRISLAYHRRCSCPIFLFRYPPLITVTGREFCSLSFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWVVSVIYMYWFNNGGIMETKVSFLGGGAGEMRLKWWEKISGNSCKIHQHYYQGIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEFAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWMAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSVDVHLIEEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLHHLLRGRKILIVDDNRVNRMVAAGALKKYGADVVCVNSGEDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAVTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1417 1127 SUPERFAMILY CheY-like 837 965 IPR011006 -
Lele18g1417 1127 SMART HKATPase_4 648 814 IPR003594 -
Lele18g1417 1127 Coils Coil 513 533 - -
Lele18g1417 1127 CDD HATPase_EvgS-ArcB-TorS-like 653 812 - -
Lele18g1417 1127 CDD PRTases_typeI 943 1018 IPR000836 -
Lele18g1417 1127 CDD REC_hyHK_CKI1_RcsC-like 991 1119 - -
Lele18g1417 1127 Gene3D CHASE domain 253 482 IPR042240 -
Lele18g1417 1127 ProSiteProfiles Histidine kinase domain profile. 543 814 IPR005467 -
Lele18g1417 1127 SMART CHASE_2 249 450 IPR006189 -
Lele18g1417 1127 Pfam Response regulator receiver domain 991 1118 IPR001789 GO:0000160
Lele18g1417 1127 Gene3D - 984 1126 - -
Lele18g1417 1127 FunFam Histidine kinase 4 508 599 - -
Lele18g1417 1127 PANTHER TWO-COMPONENT HISTIDINE KINASE 184 1116 - -
Lele18g1417 1127 PRINTS Bacterial sensor protein C-terminal signature 739 753 IPR004358 GO:0016310|GO:0016772
Lele18g1417 1127 PRINTS Bacterial sensor protein C-terminal signature 757 767 IPR004358 GO:0016310|GO:0016772
Lele18g1417 1127 PRINTS Bacterial sensor protein C-terminal signature 774 792 IPR004358 GO:0016310|GO:0016772
Lele18g1417 1127 PRINTS Bacterial sensor protein C-terminal signature 798 811 IPR004358 GO:0016310|GO:0016772
Lele18g1417 1127 ProSiteProfiles Response regulatory domain profile. 842 964 IPR001789 GO:0000160
Lele18g1417 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 648 812 IPR003594 -
Lele18g1417 1127 Gene3D - 200 252 - -
Lele18g1417 1127 Gene3D - 834 966 - -
Lele18g1417 1127 SMART REC_2 989 1119 IPR001789 GO:0000160
Lele18g1417 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 590 809 IPR036890 -
Lele18g1417 1127 CDD HisKA 536 597 IPR003661 GO:0000155|GO:0007165
Lele18g1417 1127 SMART HisKA_10 536 601 IPR003661 GO:0000155|GO:0007165
Lele18g1417 1127 ProSiteProfiles Response regulatory domain profile. 990 1123 IPR001789 GO:0000160
Lele18g1417 1127 SUPERFAMILY CheY-like 986 1123 IPR011006 -
Lele18g1417 1127 ProSiteProfiles CHASE domain profile. 249 475 IPR006189 -
Lele18g1417 1127 Gene3D - 600 816 IPR036890 -
Lele18g1417 1127 Gene3D - 504 599 - -
Lele18g1417 1127 FunFam Histidine kinase 4 253 482 - -
Lele18g1417 1127 Pfam CHASE domain 252 448 IPR006189 -
Lele18g1417 1127 Pfam His Kinase A (phospho-acceptor) domain 536 601 IPR003661 GO:0000155|GO:0007165
Lele18g1417 1127 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 524 602 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1417 Lele-ChrLele18 24406574 24412617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1417 93 1127 Miscellaneous Gene Families AT1G27320 68.126 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele18g1417 CHASE 2.4e-36 CL0165