Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1415 ATGTCCGTGAAGTGGTTCTCTTTAGCTTCATTTTCTCTCGCATCATCATCATCATCTTCATCTTCATCCATCACACCGTGCTCTTTGATCTTTCTAGTGTTACTTTGGTTTCGATATCCACCTCTCATCACAGTCACCGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAGTTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAACTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAAGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACTATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCGACGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACGGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGATCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCTGTCTACAACACAGATCTTCCATCAAATGCAGCCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCATCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGGTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAAAAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGACGTCCATCTTATTGAAGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGTTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCTACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCACCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGAGTGAACCGAATGGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAGCTGGCATTTACCCATTTTGGCTGTGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3387 0.4319 MSVKWFSLASFSLASSSSSSSSSITPCSLIFLVLLWFRYPPLITVTGREFCSLSFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLNWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFMTFQATEKKKETLASMCDERARMLQDQFNVSMNYIQAMSILISTFHHATSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPDREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNAAPNERIQATNGYLGGIFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWVAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSVDVHLIEEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLHHLLRGRKILIVDDNRVNRMVAAGALKKYGADVVCVNSGEDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSSWHLPILAVTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1415 1128 SUPERFAMILY CheY-like 987 1124 IPR011006 -
Lele18g1415 1128 Gene3D - 985 1127 - -
Lele18g1415 1128 FunFam Histidine kinase 4 509 600 - -
Lele18g1415 1128 ProSiteProfiles Response regulatory domain profile. 991 1124 IPR001789 GO:0000160
Lele18g1415 1128 ProSiteProfiles Histidine kinase domain profile. 544 815 IPR005467 -
Lele18g1415 1128 PANTHER TWO-COMPONENT HISTIDINE KINASE 160 1117 - -
Lele18g1415 1128 SMART CHASE_2 250 451 IPR006189 -
Lele18g1415 1128 SUPERFAMILY CheY-like 838 966 IPR011006 -
Lele18g1415 1128 Gene3D - 201 253 - -
Lele18g1415 1128 ProSiteProfiles CHASE domain profile. 250 476 IPR006189 -
Lele18g1415 1128 Pfam Response regulator receiver domain 992 1119 IPR001789 GO:0000160
Lele18g1415 1128 Gene3D - 835 967 - -
Lele18g1415 1128 SMART HisKA_10 537 602 IPR003661 GO:0000155|GO:0007165
Lele18g1415 1128 Pfam CHASE domain 253 449 IPR006189 -
Lele18g1415 1128 FunFam Histidine kinase 4 254 483 - -
Lele18g1415 1128 Gene3D - 505 600 - -
Lele18g1415 1128 ProSiteProfiles Response regulatory domain profile. 843 965 IPR001789 GO:0000160
Lele18g1415 1128 CDD REC_hyHK_CKI1_RcsC-like 992 1120 - -
Lele18g1415 1128 Gene3D CHASE domain 254 483 IPR042240 -
Lele18g1415 1128 SMART REC_2 990 1120 IPR001789 GO:0000160
Lele18g1415 1128 CDD PRTases_typeI 944 1019 IPR000836 -
Lele18g1415 1128 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 649 813 IPR003594 -
Lele18g1415 1128 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 591 810 IPR036890 -
Lele18g1415 1128 Gene3D - 601 817 IPR036890 -
Lele18g1415 1128 Coils Coil 514 534 - -
Lele18g1415 1128 CDD HisKA 537 598 IPR003661 GO:0000155|GO:0007165
Lele18g1415 1128 Pfam His Kinase A (phospho-acceptor) domain 537 602 IPR003661 GO:0000155|GO:0007165
Lele18g1415 1128 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 525 603 IPR036097 GO:0000155|GO:0007165
Lele18g1415 1128 CDD HATPase_EvgS-ArcB-TorS-like 654 813 - -
Lele18g1415 1128 PRINTS Bacterial sensor protein C-terminal signature 799 812 IPR004358 GO:0016310|GO:0016772
Lele18g1415 1128 PRINTS Bacterial sensor protein C-terminal signature 758 768 IPR004358 GO:0016310|GO:0016772
Lele18g1415 1128 PRINTS Bacterial sensor protein C-terminal signature 775 793 IPR004358 GO:0016310|GO:0016772
Lele18g1415 1128 PRINTS Bacterial sensor protein C-terminal signature 740 754 IPR004358 GO:0016310|GO:0016772
Lele18g1415 1128 SMART HKATPase_4 649 815 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1415 Lele-ChrLele18 24235190 24240943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1415 94 1128 Miscellaneous Gene Families AT1G27320 67.745 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele18g1415 CHASE 4.6e-37 CL0165