Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1414 ATGTCCGTGAAGTGGTTCTCTTTAGCTTCATTTTCTCTCGCATCATCATCATCATCATCATCTTCATCTTCATCCATCACACCGTGCTCTTTGATCTTTCTAGTGTTACTTTGGTTTCGATATCCACCTCTCATCACAGTCACCGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAGTTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAACTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAAGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACTATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCGAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACGGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGATCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCTGTCTACAACACAGATCTTCCATCAAATGCAGCCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCATCTTTGATATCGATTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGGTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAAAAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGTTGTCAATTCAGTTGACGTCCATCTTATTGAAGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCTACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCACCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGAGTGAACCGAATGGTAGCAGCTGGAGCTTTAAAAAATTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTGTGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3390 0.431 MSVKWFSLASFSLASSSSSSSSSSSITPCSLIFLVLLWFRYPPLITVTGREFCSLSFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLNWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFMTFQATEKKKETLASMCDERARMLQDQFNVSMNYIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPDREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNAAPNERIQATNGYLGGIFDIDSLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWVAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEVVNSVDVHLIEEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLHHLLRGRKILIVDDNRVNRMVAAGALKNYGADVVCVNSGEDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAVTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1414 1129 Pfam CHASE domain 255 451 IPR006189 -
Lele18g1414 1129 FunFam Histidine kinase 4 511 602 - -
Lele18g1414 1129 Pfam Response regulator receiver domain 993 1120 IPR001789 GO:0000160
Lele18g1414 1129 SMART REC_2 991 1121 IPR001789 GO:0000160
Lele18g1414 1129 Coils Coil 516 536 - -
Lele18g1414 1129 Gene3D - 603 818 IPR036890 -
Lele18g1414 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 593 811 IPR036890 -
Lele18g1414 1129 SUPERFAMILY CheY-like 988 1125 IPR011006 -
Lele18g1414 1129 SMART CHASE_2 252 453 IPR006189 -
Lele18g1414 1129 Gene3D - 203 255 - -
Lele18g1414 1129 CDD PRTases_typeI 945 1020 IPR000836 -
Lele18g1414 1129 ProSiteProfiles CHASE domain profile. 252 478 IPR006189 -
Lele18g1414 1129 CDD HATPase_EvgS-ArcB-TorS-like 656 814 - -
Lele18g1414 1129 SUPERFAMILY CheY-like 839 967 IPR011006 -
Lele18g1414 1129 SMART HKATPase_4 651 816 IPR003594 -
Lele18g1414 1129 Gene3D - 986 1128 - -
Lele18g1414 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 651 814 IPR003594 -
Lele18g1414 1129 ProSiteProfiles Response regulatory domain profile. 844 966 IPR001789 GO:0000160
Lele18g1414 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 98 1118 - -
Lele18g1414 1129 CDD HisKA 539 600 IPR003661 GO:0000155|GO:0007165
Lele18g1414 1129 PRINTS Bacterial sensor protein C-terminal signature 800 813 IPR004358 GO:0016310|GO:0016772
Lele18g1414 1129 PRINTS Bacterial sensor protein C-terminal signature 741 755 IPR004358 GO:0016310|GO:0016772
Lele18g1414 1129 PRINTS Bacterial sensor protein C-terminal signature 759 769 IPR004358 GO:0016310|GO:0016772
Lele18g1414 1129 PRINTS Bacterial sensor protein C-terminal signature 776 794 IPR004358 GO:0016310|GO:0016772
Lele18g1414 1129 Gene3D CHASE domain 256 485 IPR042240 -
Lele18g1414 1129 Gene3D - 507 602 - -
Lele18g1414 1129 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 527 605 IPR036097 GO:0000155|GO:0007165
Lele18g1414 1129 ProSiteProfiles Response regulatory domain profile. 992 1125 IPR001789 GO:0000160
Lele18g1414 1129 FunFam Histidine kinase 4 256 485 - -
Lele18g1414 1129 Pfam His Kinase A (phospho-acceptor) domain 539 604 IPR003661 GO:0000155|GO:0007165
Lele18g1414 1129 ProSiteProfiles Histidine kinase domain profile. 546 816 IPR005467 -
Lele18g1414 1129 CDD REC_hyHK_CKI1_RcsC-like 993 1121 - -
Lele18g1414 1129 SMART HisKA_10 539 604 IPR003661 GO:0000155|GO:0007165
Lele18g1414 1129 Gene3D - 836 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1414 Lele-ChrLele18 24024773 24030386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1414 96 1129 Miscellaneous Gene Families AT1G27320 67.555 0.0 1401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele18g1414 CHASE 3e-37 CL0165