Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1413 ATGATAGAATCTTTATGGTTTCGATATCCACCTCTCATCACAGTCACCGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAGTTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAACTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAAGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACTATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCGACGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACGGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGATCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCTGTCTACAACACAGATCTTCCATCAAATGCAGCCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCATCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGGTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAAAAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGACGTCCATCTTATTGAAGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCTACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCACCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGAGTGAACCGAATGGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTGTGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3297 0.4319 MIESLWFRYPPLITVTGREFCSLSFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLNWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFMTFQATEKKKETLASMCDERARMLQDQFNVSMNYIQAMSILISTFHHATSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPDREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNAAPNERIQATNGYLGGIFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWVAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSVDVHLIEEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLHHLLRGRKILIVDDNRVNRMVAAGALKKYGADVVCVNSGEDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAVTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1413 1098 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
Lele18g1413 1098 ProSiteProfiles CHASE domain profile. 220 446 IPR006189 -
Lele18g1413 1098 CDD PRTases_typeI 914 989 IPR000836 -
Lele18g1413 1098 Gene3D - 955 1097 - -
Lele18g1413 1098 Gene3D CHASE domain 224 453 IPR042240 -
Lele18g1413 1098 Gene3D - 805 937 - -
Lele18g1413 1098 PANTHER TWO-COMPONENT HISTIDINE KINASE 155 1087 - -
Lele18g1413 1098 SMART HisKA_10 507 572 IPR003661 GO:0000155|GO:0007165
Lele18g1413 1098 Coils Coil 484 504 - -
Lele18g1413 1098 FunFam Histidine kinase 4 224 453 - -
Lele18g1413 1098 CDD HATPase_EvgS-ArcB-TorS-like 624 783 - -
Lele18g1413 1098 Gene3D - 475 570 - -
Lele18g1413 1098 CDD REC_hyHK_CKI1_RcsC-like 962 1090 - -
Lele18g1413 1098 SMART CHASE_2 220 421 IPR006189 -
Lele18g1413 1098 FunFam Histidine kinase 4 479 570 - -
Lele18g1413 1098 Gene3D - 571 787 IPR036890 -
Lele18g1413 1098 SUPERFAMILY CheY-like 957 1094 IPR011006 -
Lele18g1413 1098 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 495 573 IPR036097 GO:0000155|GO:0007165
Lele18g1413 1098 CDD HisKA 507 568 IPR003661 GO:0000155|GO:0007165
Lele18g1413 1098 Gene3D - 171 223 - -
Lele18g1413 1098 SMART HKATPase_4 619 785 IPR003594 -
Lele18g1413 1098 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 783 IPR003594 -
Lele18g1413 1098 PRINTS Bacterial sensor protein C-terminal signature 728 738 IPR004358 GO:0016310|GO:0016772
Lele18g1413 1098 PRINTS Bacterial sensor protein C-terminal signature 769 782 IPR004358 GO:0016310|GO:0016772
Lele18g1413 1098 PRINTS Bacterial sensor protein C-terminal signature 745 763 IPR004358 GO:0016310|GO:0016772
Lele18g1413 1098 PRINTS Bacterial sensor protein C-terminal signature 710 724 IPR004358 GO:0016310|GO:0016772
Lele18g1413 1098 ProSiteProfiles Response regulatory domain profile. 813 935 IPR001789 GO:0000160
Lele18g1413 1098 SUPERFAMILY CheY-like 808 936 IPR011006 -
Lele18g1413 1098 SMART REC_2 960 1090 IPR001789 GO:0000160
Lele18g1413 1098 ProSiteProfiles Response regulatory domain profile. 961 1094 IPR001789 GO:0000160
Lele18g1413 1098 Pfam CHASE domain 223 419 IPR006189 -
Lele18g1413 1098 Pfam Response regulator receiver domain 962 1089 IPR001789 GO:0000160
Lele18g1413 1098 ProSiteProfiles Histidine kinase domain profile. 514 785 IPR005467 -
Lele18g1413 1098 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 780 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1413 Lele-ChrLele18 23783007 23788367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1413 64 1098 Miscellaneous Gene Families AT1G27320 67.650 0.0 1407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele18g1413 CHASE 4.4e-37 CL0165