Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1405 ATGATCTGGCATGTTCTAATCCCATCTAATGCCTTGAGATCCAAAACCGTTTTGTTAATCTCAATTAAGTCAAACAATAATGAACCTATGAGAGTAGCACCATTACTCTTTGCTTATCTCCCCAAGATAACTCAAAAGCACCCACTTTGGTGGAGTCCACAATTGAGCGATCGAGGTAGCTACGGCGGTCCCGCTAGCCGGTTAGCGGGCGGCTGTCCCGCTAGCCGGATCTGCCGTATGTGTTTAAGTCAAGTGGAAAGAATCATTACCCTTAGTGTTGCTCAGCGAATTTCACAGCTTCTCTACGTGGGTGGTGATCTCTTTCTGATCGCAAGAAATCGACGGAGTGTTCCTCAGCGACCTTCACAGATTCTCTCCGCGGACGGTGGTCTCTTTCCGATCACAAGAAGTCGACGCCTCAGGTCGGCTTCCTCTACTGGTATCCACACGAACAGCGTTCCAACCACGAACGACGTGCTAGCGTCTCCTGTCCCTCCAAGGCTTTCACAAGTCTCCGTCTCTATTTCGGCAGTTTCTTGAATCCATGATGATCTCAGGTCAAAGGGCATATTGACATGAACATTGTGCAGTCACGGATCGGCTGGCATTCCTTTACTTTGGAATCAGAAGCTGGTTTCAGAGCCAAAACAGTTGCAACATTCTGCTGGTCAAGATCTAAAGGGTGCTGGGAGTTGGAGGAAAAAGCTTTTAGTTACATTTGTGTTACTTGGATTAGTTGTGTCCATTTGGTTATTCTGGCACCTGAATAATGATATTATTTTGAGGAGAGAAGAAATGCTCACCACTATGTGTGACGAGCGAGCTCGCATGCTGCAGGATCAGTTCAATGTGAGCATGAACCACGTTCATGCTCTGGCTATTCTTGTTTCCACCTTTCACCACAGTAAACATCCATCTTCTATTGACCAGAAAACTTTTGGAGAATATACAGAGAGAACAGCATTTGAAAGACCACTCACTAGTGGTGTTGCTTATGCTCTGAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAGGCAGCACGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAAACACTTGTCCAAGATTGTATTCCTGAAAATCTCAATCCTGTACCCATTCAAGATGAATATGCACCAGTAATATTTGCTCAAGAAACTGTTTCCCATATTGTATCTATTGATATGATGTCTGGAAAGGAAGACCATGAGAATATCTTGCGAGCAAGAGCAACTGGAAAGGGGGTGCTAACATCTCCTTTTAAACTACTGAAGTCCAATCATTTGGGTGTTGTCCTTACATTTGCTGTCTACAATGCTAATTTTCCTCCAAATGCTACACCAGAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGACGTTCCATCACTGGTGGATAAGCTCCTCCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACTAATGCTTCTGCGCCTATCAATATGTATGGTGCTGATGTTGTTGATACTGGGTTACTACATATCAGCAACCTGGATTTTGGTGATCCTACACGAAAACATGAGATGCATTGCAGGTTCAAGCACAAGCCTCCACTACCTTGGACAGCAATCGATGCATCAGTTGGGGTACTTGTTATTACCTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGATTACCGTGAAATGAGGGAGCTTATGGTTCGTGCTGAAGCTGCAGATGTAGCAAAATCTCAGTTTTTGGCAACAGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGAAAGCCAGATGGATTATGCTCAGACTGCTCACAAGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGACCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAATTTGATCCACGTTCTATTCTAGATGAAGTCCTATCTCTTTTCTCTGGAAAATCTAATGAAATAGGAATTGAGTTGGCTGTTTTTGTATCCAAAATGGTGCCAGAAGTTGTTATTGGTGATCCTAAACGATTCTGGCAGATAATAACTAATCTTGTTGGAAATTCACTTAAGTTCACTCATGTTAAAGGACATGTATTTGTTTCGATTCATCTGGCGAAAGAAGTAAAAAGCCCACTTCACATTATGGATGTAGTGCTGAGTCAAGGGTTCCGGGACATGTCAAACAGAACCTATGATACATTGAGTGGGTTTCCTGTTGTCAATAGATGGAAAATCTGGGAAAATTTCAAAAAGTTAAGCAGTATGAATCTGATGGCTGAGCCTGGAGTGATTCAATTACTAGTGACAGTTGAGGATACAGGTGTAGGAATTCCTTTGGATGCACAAAACCGCATATTCACCCGTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGAATAGGACTGAGCATTAGTAAATGTTTAGTCGACCTCATGAGAGGAGAAATTGGATTTGTAAGTGAACCTGGAACTGGCAGTACCTTCTCTTTTAGTGCAACTTTTGGGATACCAAAAGCCTCATCTCTGGATACAAAGCGGCAGCAGTGCAACCCTTTTGTTTCAGAGTTTGAAGGACTGAGAGCATCTGTGGTGGATAGAAGAAAAATCCGTGCTGAAGTTACAAGATATTATCTGCAGAGGATGGGGATGTCTGTGGATGTTGCTCATAGTCTTAACTCAGTATCCTCTTATCTATCTGGTTCTTCCAACAAGAGTATTACTCCACAGTTGGAAATGATTATGATAGACAAGGATGTTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCAAGAAACAGAGGCAGAACGACATCAAAAGAGACCCAAAAAGTTTTCCCAAGATTTTTCTGTTGGCAAACAACCTTAGTCTCGATGAACTTAGCGAGCTAAAATCTGTCGGTGTTGTAGATGATATACTGATGAAACCTCTTTTGTTTAGTGCTTTGATTCGCTCCTATAGAGAAGCCCTTGGAAGTGAGAAGAAGCAAATAATTAGAAGGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATTTTGGTGGTTGACGATAGTGCAGTGAACAGAAAAGTAGCAGAAGGTGTGCTACGAAGATATGGGGCAAAAGTAACCTGTGTGGAGGGCGGCAGGGCTGCCTTAAAGATGCTTAAGCCACCGCATAGATTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGATTTGAAGTGACCAGACAAATCCGCTGTCTGGAGAAAGAGTTAAATGAAAAAATTGCACGTGGTGAAGCATCAACAGAGATGTTGGGTAATGTGGCTCATTGGCACATGCCAATATTGTCTATGACAGCTGATGTAACTCAAGCTTCAATCGAAGAGTGCAATAGGTGTGGGATGGATGACTATGTGTCAAAGCCATTTGAAGAAGAACAGCTCCGTGAGGCAGTGGAACGTTGCTTTGGGTCTGTAAGTTCTGTGTTCATCTCTATTTTTTCAATTTACTTGGGCTTTATACATGATAAAGGAAGCGACCAGCCACCAATGAGTTTTGACTTAACTGATATGGGACGAAGGATCCAGATTGAGAGTGCTATTGATATTCAAAGGACAAGAAAGCGGTCTTGCATGTACATAACACAGTTTTGTTCCCACTTTTCTCATGTCTTGTGTATATCATATTTATATTCAATTGAAGGAAGTAGGAAAAGATATGGTGTCATGGTGATGAAGTCGGATCGTATAGCGTATTTTGTTGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCAGTCTACAACACAGATCTTCCATCAAATGCAACCCCGAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATGTCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCGTACCCCCCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAAAAACGAGCAGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGGGTATATCTCATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACCGTCCATCTTATTGAAGAAGTTGTCAATTCAATTGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCAACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCGCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAATAGTAGCAGCTGGAGCTTTAGAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGTTGCCATCGCTATGCTGAAGCCGCCTCATAAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 6156 0.4217 MIWHVLIPSNALRSKTVLLISIKSNNNEPMRVAPLLFAYLPKITQKHPLWWSPQLSDRGSYGGPASRLAGGCPASRICRMCLSQVERIITLSVAQRISQLLYVGGDLFLIARNRRSVPQRPSQILSADGGLFPITRSRRLRSASSTGIHTNSVPTTNDVLASPVPPRLSQVSVSISAVSXIHDDLRSKGILTXTLCSHGSAGIPLLWNQKLVSEPKQLQHSAGQDLKGAGSWRKKLLVTFVLLGLVVSIWLFWHLNNDIILRREEMLTTMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSSIDQKTFGEYTERTAFERPLTSGVAYALKVLHSDREHFERQHGWTIKKMETENETLVQDCIPENLNPVPIQDEYAPVIFAQETVSHIVSIDMMSGKEDHENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANFPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPINMYGADVVDTGLLHISNLDFGDPTRKHEMHCRFKHKPPLPWTAIDASVGVLVITLLLGHIFYAAISRIAKVEDDYREMRELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDESQMDYAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVEFDPRSILDEVLSLFSGKSNEIGIELAVFVSKMVPEVVIGDPKRFWQIITNLVGNSLKFTHVKGHVFVSIHLAKEVKSPLHIMDVVLSQGFRDMSNRTYDTLSGFPVVNRWKIWENFKKLSSMNLMAEPGVIQLLVTVEDTGVGIPLDAQNRIFTRFMQADSSTSRTYGGTGIGLSISKCLVDLMRGEIGFVSEPGTGSTFSFSATFGIPKASSLDTKRQQCNPFVSEFEGLRASVVDRRKIRAEVTRYYLQRMGMSVDVAHSLNSVSSYLSGSSNKSITPQLEMIMIDKDVLDKESSLLYVIKKQRQNDIKRDPKSFPKIFLLANNLSLDELSELKSVGVVDDILMKPLLFSALIRSYREALGSEKKQIIRRKEPNLGNLLRQKHILVVDDSAVNRKVAEGVLRRYGAKVTCVEGGRAALKMLKPPHRFDACFMDLQMPEMDGFEVTRQIRCLEKELNEKIARGEASTEMLGNVAHWHMPILSMTADVTQASIEECNRCGMDDYVSKPFEEEQLREAVERCFGSVSSVFISIFSIYLGFIHDKGSDQPPMSFDLTDMGRRIQIESAIDIQRTRKRSCMYITQFCSHFSHVLCISYLYSIEGSRKRYGVMVMKSDRIAYFVEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNRTPPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVEGISHKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRIVAAGALEKYGADVVCVNSGKVAIAMLKPPHKFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 2051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1405 2051 PRINTS Bacterial sensor protein C-terminal signature 830 848 IPR004358 GO:0016310|GO:0016772
Lele18g1405 2051 PRINTS Bacterial sensor protein C-terminal signature 795 809 IPR004358 GO:0016310|GO:0016772
Lele18g1405 2051 PRINTS Bacterial sensor protein C-terminal signature 854 867 IPR004358 GO:0016310|GO:0016772
Lele18g1405 2051 PRINTS Bacterial sensor protein C-terminal signature 813 823 IPR004358 GO:0016310|GO:0016772
Lele18g1405 2051 ProSiteProfiles Response regulatory domain profile. 894 1024 IPR001789 GO:0000160
Lele18g1405 2051 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1523 1733 IPR036890 -
Lele18g1405 2051 Coils Coil 566 586 - -
Lele18g1405 2051 FunFam Histidine kinase 4 1441 1532 - -
Lele18g1405 2051 CDD REC_hyHK_CKI1_RcsC-like 1048 1180 - -
Lele18g1405 2051 Pfam CHASE domain 307 501 IPR006189 -
Lele18g1405 2051 Pfam CHASE domain 1283 1381 IPR006189 -
Lele18g1405 2051 CDD HATPase_EvgS-ArcB-TorS-like 1583 1736 - -
Lele18g1405 2051 SMART HisKA_10 589 654 IPR003661 GO:0000155|GO:0007165
Lele18g1405 2051 SMART HisKA_10 1469 1534 IPR003661 GO:0000155|GO:0007165
Lele18g1405 2051 Gene3D CHASE domain 1278 1415 IPR042240 -
Lele18g1405 2051 Gene3D CHASE domain 308 535 IPR042240 -
Lele18g1405 2051 ProSiteProfiles CHASE domain profile. 1255 1408 IPR006189 -
Lele18g1405 2051 ProSiteProfiles Response regulatory domain profile. 1047 1184 IPR001789 GO:0000160
Lele18g1405 2051 Pfam Response regulator receiver domain 1915 2042 IPR001789 GO:0000160
Lele18g1405 2051 Pfam Response regulator receiver domain 1048 1181 IPR001789 GO:0000160
Lele18g1405 2051 PANTHER TWO-COMPONENT HISTIDINE KINASE 238 1181 - -
Lele18g1405 2051 Gene3D - 255 307 - -
Lele18g1405 2051 Gene3D - 1533 1740 IPR036890 -
Lele18g1405 2051 SMART CHASE_2 1220 1383 IPR006189 -
Lele18g1405 2051 SMART CHASE_2 304 503 IPR006189 -
Lele18g1405 2051 CDD PRTases_typeI 1867 1942 IPR000836 -
Lele18g1405 2051 ProSiteProfiles Histidine kinase domain profile. 1476 1738 IPR005467 -
Lele18g1405 2051 SUPERFAMILY CheY-like 1045 1185 IPR011006 -
Lele18g1405 2051 Gene3D - 1041 1187 - -
Lele18g1405 2051 CDD HisKA 1469 1530 IPR003661 GO:0000155|GO:0007165
Lele18g1405 2051 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1578 1736 IPR003594 -
Lele18g1405 2051 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 701 866 IPR003594 -
Lele18g1405 2051 FunFam Histidine kinase 4 1262 1415 - -
Lele18g1405 2051 Pfam His Kinase A (phospho-acceptor) domain 1469 1534 IPR003661 GO:0000155|GO:0007165
Lele18g1405 2051 Pfam His Kinase A (phospho-acceptor) domain 589 654 IPR003661 GO:0000155|GO:0007165
Lele18g1405 2051 CDD HATPase_EvgS-ArcB-TorS-like 708 868 - -
Lele18g1405 2051 SUPERFAMILY CheY-like 1761 1889 IPR011006 -
Lele18g1405 2051 Gene3D - 653 871 IPR036890 -
Lele18g1405 2051 Gene3D - 1903 2048 - -
Lele18g1405 2051 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 1457 1535 IPR036097 GO:0000155|GO:0007165
Lele18g1405 2051 FunFam Histidine kinase 4 561 652 - -
Lele18g1405 2051 FunFam Histidine kinase 4 308 535 - -
Lele18g1405 2051 SMART HKATPase_4 1578 1738 IPR003594 -
Lele18g1405 2051 SMART HKATPase_4 701 870 IPR003594 -
Lele18g1405 2051 Coils Coil 1446 1466 - -
Lele18g1405 2051 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 643 865 IPR036890 -
Lele18g1405 2051 CDD HisKA 589 650 IPR003661 GO:0000155|GO:0007165
Lele18g1405 2051 SUPERFAMILY CheY-like 1910 2047 IPR011006 -
Lele18g1405 2051 Gene3D - 561 652 - -
Lele18g1405 2051 Gene3D - 1437 1532 - -
Lele18g1405 2051 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 574 655 IPR036097 GO:0000155|GO:0007165
Lele18g1405 2051 CDD REC_hyHK_CKI1_RcsC-like 1915 2043 - -
Lele18g1405 2051 ProSiteProfiles Response regulatory domain profile. 1914 2047 IPR001789 GO:0000160
Lele18g1405 2051 ProSiteProfiles CHASE domain profile. 304 528 IPR006189 -
Lele18g1405 2051 SMART REC_2 1046 1180 IPR001789 GO:0000160
Lele18g1405 2051 SMART REC_2 1913 2043 IPR001789 GO:0000160
Lele18g1405 2051 Gene3D - 1758 1890 - -
Lele18g1405 2051 ProSiteProfiles Response regulatory domain profile. 1766 1888 IPR001789 GO:0000160
Lele18g1405 2051 ProSiteProfiles Histidine kinase domain profile. 596 870 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1405 Lele-ChrLele18 22649908 22664898 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1405 1283 2048 Miscellaneous Gene Families AT5G35750 57.107 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele18g1405 CHASE 3.7e-34 CL0165