Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1388 ATGAAAGGCGGTAGACTCCGGATCCTGAAAAGAAATGGGAGAAACATAACCGAAACCCAGAAAAGGGGACAATGCTCTCAGAGAATGGAAGACATGGATCAAGTACCCATGGACCTTGATCCGTCGCGAACGGCGACACCGACTGCCAAAAGCAAGCCACGAACCCAGATGGTAACAAGTACGCGGCAATATGTGAGCCAATTTCTTTTACGCTTTGATGGAATGGCAGATCTTGCTAGCTATGGGAATTCTGAGCGTGACATTGAGCAAGCACTTGTAGCTTTGAAAAAAGGTTCTCAGTTACTCAAGTATAATCGGAAAGGGAAGCCAAAATTTCGTCCCTTTAGACTCTCACCCGATGCTACAACATTGATTTGGATTTCTCATGGACGGGAAAAAAATCTAAAGTTGTCTTCTGTTTCACGTATCATCCCTGGACAAAGAACCGCTGTATTTAGAAGGCACTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTATAAAAACGGAGAACGAACACTTGATCTGGTTTGCAAGGACAAAGCTGAGACAGAGATATGGTTTGGAGGCATGAAGGCATTAATTTCTCCAGGACTACGGTCTAAAAGTAACTTATATGATGTACAAGATGGTGCTGACTTTTTCCCAATTAGTCGTGCAACATTAGAGTTTACTTCAAGCATTGGACGTGGAAGGGATTCCACAGAATCTCCATTGTTTTGGGCATCAGAACGTTCAAATATGCAACTAAGGTCAAGTGCTTCAGATGGCTTCCGTCTTAGTGTGTCAAGCACGCCTAGTTGTTCAAGTGGAGGATCAGGGCCAGATGACATAGAGTCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGATGGATGGGGCTTCTCCTGATGCTTGGATGGCAGACGTGTTAGTTCCTAAGCCATTAGAGTCAAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGCATGCGTCATATTGCTCTGGTTACAAGGCAGGGAGAGGTTTTTTCTTGGGGTGAGGAATTTGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTTTGCCACCCCCATCTTATTGAGTCCCTCTCCATTCAAAATGTTGACTTTATTGCGTGCGGGGAGTATCATACATGTGCTATTTCTATGTCAGGTGATCTATTCACATGGGGAGATGGTGCTCATAATGCCGGGCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATGCCAAAGAGGGTCACTGGTCCTTTAGAAGGTCTTCAAGTTTTATCAGTTTCATGTGGTACATGGCATTCTGCATTAGCAACCTCTAATGGGAAATTATTTACCTTTGGTGATGGAACATTTGGTGTGTTGGGCCATGGAAATCGGAGGAGCGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGACTCAAGACTGTTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCCAGGAAGCTATTCACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACCTACCTTCAACCAACCTGTGTCTCTGCACTAATTGATTATAATTTCCACCAGATAGCTTGTGGCCACACTCTGACTGTTGCCTTAGATACATCTGGTTTTGTATTTACTATGGGTGGCACTACATATGGTCAATTAGGAAATGCTTGGTCTGATGGAAAAACACCTGTAAAGGTTCAAGATAAGTTAGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTCTTGACGTCACGAAGCGAATTATATACCTGGGGCAGGGGAGCGAATGGAAGATTGGGCCATGGAGATACAGAAGACCGAAAATCTCCAACACTAGTTGAAGGTTTAAAAGATAGGCATGTAAAAAATATCTCTTGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAGTGGGTCTCTGGATCTGATCAATCTGTTTGCTCTGGTTGTCGCCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGCTTGGTGCATTGCCATGCTTGCAGTTCCAAGAAGGCTTTAAGAGCAGCATTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATGGTAAACTTAAAGCTACTGAGAGTGCTAGTGCTTCCACTTTTAATAGGAAACCTACTCCTCCTCGTCAATCCCTAGATGGCAAGGAAAGATTAGATCGGGGAGAAATAAGGTCTTCAAGAATTCTCATGTCTTCTGTCAGTGAGCCAGTAAAATTCCTTGAGATATGGGGAAACAAGCCAGAATCTAAACATGACTTTTCTTCCCTTGCCCGTACTCCACAATCAATTTCACAATTCAAAGATGCTGCATTTCCAAGTTCATTGAGGCCCATTCATAATGCTTTCAAGCCTGCTTCTGTAACTTTAAGTCCACCGCGAACTCCACTAGCCAGTTCACGACCTGCATCGCCATATACAAGAAGACCAAGTCCACCACGATCTGCCACCCCTGGATTTTCTAGAAGCATGATTGAAAATTTGAGCAAGTCAAATGAGGTTATGAACCAAGAACTCTCAAAATTACAAAATAAAATTCGAAATTTGAAGCAGAAGAACGACATGCAAGATATGGAGATTCAGAAGCTCAAGAAAAATGTTAAGGAAGCTACCCTGTTGACTGGAGAGGAATCTTCTAAGCATAGGCTAGCTAGGGAATTTATTAAGAGCATGACAGATCAGTTGAAATCTGTGACACAGAATTTGCCACCAGACAATCCAGACAATGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTAAGAGAAAATCTAGAATCTGAAGCATCATCATCTTTCATACTTTCAAACTTAGAGTTTAATCAAGAAATCGGACCCGATACGCTAGCTACAGATATTGATGGTTCTAAATTGCAAGAAAATAAACTTGAAGAAGCTATCGATCCTTCTGGAGATAGATCATCTGTATCTAGTATAGAGGCAGCAACTCCTCCACAAAGCTTAGAAAATGGTTCACAATCACAAGACTCTATGAGACTAGGGAGAGAAAAAGAATCACAGGTCATCGAACAATTTGAACCTGGTGTTTATGTGACGCTAGTAGTATTGCCAAGTGGTATAAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCGATGCACAGCAGGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGTTTAGAAAGTATAGTTCACCCACAATAAATCATGCAGCTACTGGGTCATCATCAAGCAATCAACCCTTAGCTGAAGAGAACGCTGAACCTTCTTGA 3378 0.4207 MKGGRLRILKRNGRNITETQKRGQCSQRMEDMDQVPMDLDPSRTATPTAKSKPRTQMVTSTRQYVSQFLLRFDGMADLASYGNSERDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKNLKLSSVSRIIPGQRTAVFRRHLRPEKDYLSFSLVYKNGERTLDLVCKDKAETEIWFGGMKALISPGLRSKSNLYDVQDGADFFPISRATLEFTSSIGRGRDSTESPLFWASERSNMQLRSSASDGFRLSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWMDGASPDAWMADVLVPKPLESNVVLDVQQIASGMRHIALVTRQGEVFSWGEEFGGRLGHGIDKDFCHPHLIESLSIQNVDFIACGEYHTCAISMSGDLFTWGDGAHNAGLLGHGSDVSHWMPKRVTGPLEGLQVLSVSCGTWHSALATSNGKLFTFGDGTFGVLGHGNRRSVSYPREVQSLSGLKTVKVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGHTLTVALDTSGFVFTMGGTTYGQLGNAWSDGKTPVKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYGKLKATESASASTFNRKPTPPRQSLDGKERLDRGEIRSSRILMSSVSEPVKFLEIWGNKPESKHDFSSLARTPQSISQFKDAAFPSSLRPIHNAFKPASVTLSPPRTPLASSRPASPYTRRPSPPRSATPGFSRSMIENLSKSNEVMNQELSKLQNKIRNLKQKNDMQDMEIQKLKKNVKEATLLTGEESSKHRLAREFIKSMTDQLKSVTQNLPPDNPDNETLRNIHAQAEDFLRENLESEASSSFILSNLEFNQEIGPDTLATDIDGSKLQENKLEEAIDPSGDRSSVSSIEAATPPQSLENGSQSQDSMRLGREKESQVIEQFEPGVYVTLVVLPSGIKVFKRVRFSKRRFDAQQAEEWWNKNKDRVFRKYSSPTINHAATGSSSSNQPLAEENAEPS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1388 1125 MobiDBLite consensus disorder prediction 1003 1040 - -
Lele18g1388 1125 Coils Coil 861 902 - -
Lele18g1388 1125 Gene3D - 400 502 IPR009091 -
Lele18g1388 1125 Gene3D - 238 399 IPR009091 -
Lele18g1388 1125 MobiDBLite consensus disorder prediction 44 58 - -
Lele18g1388 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 388 IPR000408 -
Lele18g1388 1125 SUPERFAMILY FYVE/PHD zinc finger 662 734 IPR011011 -
Lele18g1388 1125 CDD PH_PLC_plant-like 86 198 - -
Lele18g1388 1125 Pfam Pleckstrin homology domain 89 197 IPR001849 -
Lele18g1388 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Lele18g1388 1125 SUPERFAMILY PH domain-like 87 197 - -
Lele18g1388 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 610 661 IPR000408 -
Lele18g1388 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 508 554 IPR000408 -
Lele18g1388 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 611 658 IPR000408 -
Lele18g1388 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 558 606 IPR000408 -
Lele18g1388 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 388 439 IPR000408 -
Lele18g1388 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 337 385 IPR000408 -
Lele18g1388 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 443 492 IPR000408 -
Lele18g1388 1125 PRINTS Chromosome condensation regulator RCC1 signature 430 446 IPR000408 -
Lele18g1388 1125 PRINTS Chromosome condensation regulator RCC1 signature 547 565 IPR000408 -
Lele18g1388 1125 PRINTS Chromosome condensation regulator RCC1 signature 446 460 IPR000408 -
Lele18g1388 1125 PRINTS Chromosome condensation regulator RCC1 signature 605 626 IPR000408 -
Lele18g1388 1125 PRINTS Chromosome condensation regulator RCC1 signature 319 332 IPR000408 -
Lele18g1388 1125 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Lele18g1388 1125 CDD FYVE_like_SF 672 724 - -
Lele18g1388 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Lele18g1388 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 443 IPR000408 -
Lele18g1388 1125 MobiDBLite consensus disorder prediction 1101 1125 - -
Lele18g1388 1125 MobiDBLite consensus disorder prediction 1009 1035 - -
Lele18g1388 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 323 333 IPR000408 -
Lele18g1388 1125 Gene3D - 87 202 IPR011993 -
Lele18g1388 1125 MobiDBLite consensus disorder prediction 18 58 - -
Lele18g1388 1125 Pfam Transcription factor regulating root and shoot growth via Pin3 1044 1098 IPR013591 -
Lele18g1388 1125 SUPERFAMILY RCC1/BLIP-II 283 663 IPR009091 -
Lele18g1388 1125 Pfam Transcription factor BRX N-terminal domain 912 946 IPR027988 -
Lele18g1388 1125 FunFam PH, RCC1 and FYVE domains-containing protein 1 255 497 - -
Lele18g1388 1125 MobiDBLite consensus disorder prediction 821 857 - -
Lele18g1388 1125 Pfam FYVE zinc finger 662 727 IPR000306 GO:0046872
Lele18g1388 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Lele18g1388 1125 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 666 728 IPR017455 -
Lele18g1388 1125 ProSiteProfiles BRX domain profile. 1044 1099 IPR013591 -
Lele18g1388 1125 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 132 937 - -
Lele18g1388 1125 SMART fyve_4 660 729 IPR000306 GO:0046872
Lele18g1388 1125 MobiDBLite consensus disorder prediction 734 757 - -
Lele18g1388 1125 MobiDBLite consensus disorder prediction 1098 1125 - -
Lele18g1388 1125 Gene3D - 503 661 IPR009091 -
Lele18g1388 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 482 492 IPR000408 -
Lele18g1388 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 739 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1388 Lele-ChrLele18 19025337 19035515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1388 1047 1107 Major Intrinsic Protein MIP AT1G31880 40.984 5.12e-10 60.8