Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1351 ATGAGATTATTTCTTTTTGTACTTGGGTATGTGCCAACTGGTTTTATTGGCAGACAGGATGGAGATGACGTTGTGAAAGGGCGAACTGGTGATTGCAGACAGAAGTTTGAGCTTGCTGAAGAAAAAATTGTTGAAAAGGTTCAAGGCCATTCTTCGCACCCTGAAAGGAATGCATGTCCTGCTCAAGTAGACTTTGTTGAACATGGACATGCATACATGACATCAAAATCTTCTGGGAATGGGTCATACAGTGCTCCAGAATCTGTTAAAGCTAATGATCAATGTTGTGAGAAGTCTAATTTAGCCAACTTCGCTGCTACAGATACCACTAAAGTTGTGGATCATGTCTCAGAGTCGCATAATATATCAGCAAAATCTGTACCAAGGAATACGGAATCGGTGAAGAATGCTAAGGAATTCAAGCTCAACCCAGCTGCCAAAGTTTTCTCCCCATCCTTTGTAAATCCTATTTCAGTTACTCCTAGTGGGCCTCCTGTACCAACAGCTGCGAACATGGCTTACTTACCAAATTCCTCTTCTGTTGTACCTATTACTGCTATTCAATCAGAAGTTGGATTCAATAATCTTGTGTCACAGCCTTTTTTGCCTGTTAAAGTCGCTCAGTATGGCAATTTGACAGCAGCAAATGGTGGCAGTGGTTCTCAATTCACCCAACATCTGACGCATCGGATGCAACCTATGAGATTTGCGGCATATTATAATCCTGTTTTGTCTGAACCAACTTATATGCAACCAAGCTCTCCTGCTGTTATGGTTGGGCGTTCCAGGCGGCTTGTCTATGTTCATCCTGTTACTCATGTAAGAAAGAATGGCTGGATAACTATAACCCTTTTTCTCAGTGGGGAAGAAATTGTTGGATTGTCTTGTGGGATGAAGGATCTGGTTCATGGTGCTACAACTATCTCACCTGACTCACCACGCCCTTTGTTAAATATGAATCACGTTCAATTGCCAAAGCAACAAGGAGGCACAGGGGGTCAAGTGATTCCGCTTTGTGTTCCACCACCTGTCCTAGGGGCAGCAGCCCTTTGCACTACAAAACCACATTCCAACCCCATTTCGCTTCACCCTTCATTCTCTCTCTCACCCCGCCCTTTTCATCCTTTCCCAATTTCTGTGAACCCTAGTCTCATCAGGGTTTTCTCTTTCTGGTCTCCTGTTCCCTCCCTTTTGCTTTCAGTTTCCGTCTCACTTTACTCGATAGATCTCGTTTCCATGGACCTTGGTGGAGGAGTTCGTAAGAGGGAAAGGCCTGAAGCTCCCTTTAATGGCAATGGCGGCGTCAAGAAATCCCGGCCAGAAATGGAGTCCTTTCCAACTGGTTTAGGAGGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGTTGCCCATTTGGTGAAGGATGTCATTTCTTGCATTATGTGCCTGGGGGTATAAAAGCTGTCTCTCAGATGATCAATGTCGGTACCAATCCTGCACTTCCACAAGCTCCCAGAAATACAACTTTTCCACCATCCTTTCCAGATGGCTCCTCCCCTCCGGCTGTTAAAACCCGCATATGCAACAAGTATAATACCGCCGAAGGTTGCAAATTTGGCGAGAAATGCCACTTCGCCCATGGTGAGTGGGAGCTTGGAAAGCAAACAATCCCATCACATGATGATCCTCGTTCCATGGGACAAATGCAAAGCCGGGTCGGTGGGCGGGTCGAGCACCCACCTCGGGCTCATGGAGCTGCAGGCAGCTTTGGAGCCTCTGCTACCGCTAAGATTAGTATCAATGCTTCGCATACTGGAGCGATCATTGGAAAAAATGGTGTCAATTCTAAACAAATTTGTCGTGTGACAGGAGCAAAACTTTCAATACGGGATCATGAATCAGATCCAAGTCTCAAGAACATTGAGCTGGAGGGCAGCTTTGATCAGATCAAACAAGCAAGTGCTATGGTTCGTGAACTTATTGTAAATGTTGGTTCTGTCTCTGGGCCTCCTCCGAAAAGCATGGCACCACATGGCCCTGCCCCAGCTAGCAATTTCAAGACAAAACTGTGTGAAAACTTTGCCAAAGGATCCTGCACTTTTGGGGAAAGGTGCCATTTCGCACACGGAGCCGAAGAATTACGCAAGTCTGGAATGTGA 2145 0.4583 MRLFLFVLGYVPTGFIGRQDGDDVVKGRTGDCRQKFELAEEKIVEKVQGHSSHPERNACPAQVDFVEHGHAYMTSKSSGNGSYSAPESVKANDQCCEKSNLANFAATDTTKVVDHVSESHNISAKSVPRNTESVKNAKEFKLNPAAKVFSPSFVNPISVTPSGPPVPTAANMAYLPNSSSVVPITAIQSEVGFNNLVSQPFLPVKVAQYGNLTAANGGSGSQFTQHLTHRMQPMRFAAYYNPVLSEPTYMQPSSPAVMVGRSRRLVYVHPVTHVRKNGWITITLFLSGEEIVGLSCGMKDLVHGATTISPDSPRPLLNMNHVQLPKQQGGTGGQVIPLCVPPPVLGAAALCTTKPHSNPISLHPSFSLSPRPFHPFPISVNPSLIRVFSFWSPVPSLLLSVSVSLYSIDLVSMDLGGGVRKRERPEAPFNGNGGVKKSRPEMESFPTGLGGKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMINVGTNPALPQAPRNTTFPPSFPDGSSPPAVKTRICNKYNTAEGCKFGEKCHFAHGEWELGKQTIPSHDDPRSMGQMQSRVGGRVEHPPRAHGAAGSFGASATAKISINASHTGAIIGKNGVNSKQICRVTGAKLSIRDHESDPSLKNIELEGSFDQIKQASAMVRELIVNVGSVSGPPPKSMAPHGPAPASNFKTKLCENFAKGSCTFGERCHFAHGAEELRKSGM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1351 714 FunFam Zinc finger CCCH domain-containing protein 675 711 - -
Lele18g1351 714 CDD KH-I 590 652 - -
Lele18g1351 714 PANTHER CCCH ZINC FINGER/TIS11-RELATED 199 577 IPR045877 GO:0003729
Lele18g1351 714 SMART c3hfinal6 517 544 IPR000571 GO:0046872
Lele18g1351 714 SMART c3hfinal6 452 477 IPR000571 GO:0046872
Lele18g1351 714 SMART c3hfinal6 680 706 IPR000571 GO:0046872
Lele18g1351 714 ProSiteProfiles Zinc finger C3H1-type profile. 517 545 IPR000571 GO:0046872
Lele18g1351 714 Gene3D K Homology domain, type 1 584 677 IPR036612 GO:0003723
Lele18g1351 714 Gene3D - 678 712 - -
Lele18g1351 714 Gene3D - 512 550 - -
Lele18g1351 714 ProSiteProfiles Zinc finger C3H1-type profile. 680 707 IPR000571 GO:0046872
Lele18g1351 714 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 581 661 IPR036612 GO:0003723
Lele18g1351 714 FunFam Zinc finger CCCH domain-containing protein 512 549 - -
Lele18g1351 714 ProSiteProfiles Zinc finger C3H1-type profile. 450 478 IPR000571 GO:0046872
Lele18g1351 714 SUPERFAMILY CCCH zinc finger 679 710 IPR036855 GO:0046872
Lele18g1351 714 ProSiteProfiles Type-1 KH domain profile. 588 652 - -
Lele18g1351 714 SUPERFAMILY CCCH zinc finger 452 476 IPR036855 GO:0046872
Lele18g1351 714 Pfam KH domain 591 654 IPR004088 GO:0003723
Lele18g1351 714 SUPERFAMILY CCCH zinc finger 516 547 IPR036855 GO:0046872
Lele18g1351 714 SMART kh_6 587 657 IPR004087 GO:0003676
Lele18g1351 714 MobiDBLite consensus disorder prediction 422 449 - -
Lele18g1351 714 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 681 705 IPR000571 GO:0046872
Lele18g1351 714 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 519 544 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1351 Lele-ChrLele18 13278067 13295361 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele18g1351 KH_1 1.5e-09 CL0007