Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele18g1338 | ATGCTCTCTGCATTCGTGGGTTCATGTTTGAGTTTCATTTCTGCTGATCTTCCTCTCCTCTCGTTATTCTTTACTGTCTCTACAGTCTCCGGCGAGGTGCCAGAAGAGCCAGTGGTGTCGAGGAAGTCTGGGTTGCTCTATGAGAAGCGTTTAATTGAGAGGCACATTGCGGACTATGGAAAGTGTCCAATTACCGGAGAACCTCTTACTTCAGATGACATTATTCCAATAAAAACAGGCAAGATAGTGAGGCCAAGGCCTGTACAGGCAGCAAGTATCCCGGGCATGCTTGGAATTTTCCAAAATGAATGGGATGGATTGATGCTGTCTAACTTTGCATTAGAGCAGCAACTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAACATGATGCTGCTTGCCGAGTGATTGCAAGGCTTAAAAAGGAAAGGGATGAAGCAAGGTCATTACTTGCACAAGCAGAAAGGCAGTTCCCTGTTTCCACGCAAAATACAATGACATCAAATGCTGTTGCTCTGAGCAATGGGAAAAGAGCTGCTGAAGATGAAGAACAGGCCCCTGGTGGGAAGAAATTACATACTGGAATCACTAGTGCCATAATTGATGAGCTGACTGAGTGTAATGCATCTCTGTCGCAGCAGAGGAAAAAGCGGCAGATTCCTGCAACTTTGGCTCCTGTTGAGGCTTTAGAGGGATATACCCAGATATCCAGTCATCCCGTTCACAAAACGAGCAAACCAGGCATTGTATCTATGGATATCCTTTATTCTAAGGATTTAATTGCCACTGGAGGGCTAGATACAAATGCTGTGATTTTTGACCGGCCATCAGGGCAGATATTATCCACACTCAGTGGTCACTCAAAAAAGGTTACAAGTGTGAAATTTGTAGCTCAGGGCGATCAGTTTATAACTGGTTCAGCAGACAAGACAGTTCGTTTGTGGCAAAGCTCAGATGATGGTAACTACATCTGCAGACATGTATTGAAGGATCACACAGCCGAGGTGCAAGCAGTCACTGTCCATGCTACTAACAACTACTTTGTCACTGCTTCCCTTGACAGCACATGGTGCTTTTATGAAATTTCTTCAGGGACATGTCTGAATCAGGTTTCAGACTCTTCTGGATCTTCTGGAGGCTATACTTCTGCAGCTTTTCATCCTGATGGTCTCATTCTCGGAACTGGCACGGCGGAAGCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACATGTAGGGGCAGTGACCGCTATATCCTTTTCTGAGAATGGTTACTTCCTTGCGACTGCAGCCCATGATGGTGTAAAACTATGGGATCTTCGTAAACTGAAAAACTTCCGGACTTTTGCTCCATATGATCTAGACACTCCAACAAATTCGGTGGAATTCGACCATAGCGGTTCCTACCTTGGAGTTGCAGGATCTGATGTTAGGATTTACCAAGTTGCAAACGTGAAATCTGAATGGAACTGTATTAAAACTTTCCCTGATTTGTCTGGAACAGGGAAAGCCACTTGTGTTAAATTTGGTCCAGATGCTAAATATGTAGCAGTCGGATCAATGGACCGTAATCTTCGAATATTTGGCCTACCCAGTGAAGATGGGAATTCTAAGTCATAA | 1650 | 0.443 | MLSAFVGSCLSFISADLPLLSLFFTVSTVSGEVPEEPVVSRKSGLLYEKRLIERHIADYGKCPITGEPLTSDDIIPIKTGKIVRPRPVQAASIPGMLGIFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSTQNTMTSNAVALSNGKRAAEDEEQAPGGKKLHTGITSAIIDELTECNASLSQQRKKRQIPATLAPVEALEGYTQISSHPVHKTSKPGIVSMDILYSKDLIATGGLDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGDQFITGSADKTVRLWQSSDDGNYICRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYEISSGTCLNQVSDSSGSSGGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDLDTPTNSVEFDHSGSYLGVAGSDVRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYVAVGSMDRNLRIFGLPSEDGNSKS | 549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 331 | 372 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | ProSiteProfiles | U-box domain profile. | 20 | 94 | IPR003613 | GO:0004842|GO:0016567 | |
| Lele18g1338 | 549 | Coils | Coil | 139 | 159 | - | - | |
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 376 | 411 | - | - | |
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 418 | 451 | - | - | |
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 286 | 318 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 418 | 458 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | Pfam | Prp19/Pso4-like | 90 | 155 | IPR013915 | - | |
| Lele18g1338 | 549 | CDD | RING-Ubox_PRP19 | 26 | 78 | - | - | |
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 286 | 318 | - | - | |
| Lele18g1338 | 549 | SMART | Ubox_2 | 24 | 90 | IPR003613 | GO:0004842|GO:0016567 | |
| Lele18g1338 | 549 | CDD | WD40 | 250 | 538 | - | - | |
| Lele18g1338 | 549 | FunFam | pre-mRNA-processing factor 19 | 223 | 540 | - | - | |
| Lele18g1338 | 549 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 84 | IPR013083 | - | |
| Lele18g1338 | 549 | Gene3D | - | 226 | 540 | IPR015943 | GO:0005515 | |
| Lele18g1338 | 549 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 376 | 417 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 234 | 276 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 411 | 449 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 366 | 408 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 452 | 491 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 324 | 363 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 279 | 318 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SMART | WD40_4 | 498 | 539 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | SUPERFAMILY | RING/U-box | 29 | 77 | - | - | |
| Lele18g1338 | 549 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 29 | 541 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Lele18g1338 | 549 | Pfam | WD domain, G-beta repeat | 414 | 449 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | Pfam | WD domain, G-beta repeat | 280 | 317 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | Pfam | WD domain, G-beta repeat | 499 | 538 | IPR001680 | GO:0005515 | |
| Lele18g1338 | 549 | FunFam | Pre-mRNA-processing factor 19, putative | 25 | 82 | - | - | |
| Lele18g1338 | 549 | SUPERFAMILY | WD40 repeat-like | 249 | 538 | IPR036322 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele18g1338 | Lele-ChrLele18 | 11217771 | 11228090 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele18g1338 | 29 | 549 | U-box Gene Family | AT1G04510 | 74.330 | 0.0 | 819 |