Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1331 ATGGGTTGTTGGAGCATAATAGAAGAAGAAGCTGGTTGGAGGAAGGGGCCTTGGACTGCTGAAGAAGACAGACTTCTGATTGATTATGTCAGAATGTATGGTGAAGGAAGATGGAACTCAGTTTCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGTTGCAGATTGAGGTGGGTGAATTATCTGAGGCCAGACCTCAAGAGAGGTCAGATAACACCACAAGAAGAAAGCATAATTATAGAGCTTCATGCTAGGTGGGGAAACAGATGGTCAACAATTGCAAGGAACTTGCCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAGAAGGCTAAGAGTCCCACTGATGCTGGAGAAAAGGCGAAAAATCGCCTTTTGAGAAGACAACAGTTTCATCAACAACAACAAAAACAACAGCAGCAGCAACAACAATTACAGTTGAACATGAAAGGTATCATGGCCTTACTTGAAGACAATAACAATGATTATTACAAAGTGCCTTCTACTCTTTGCTCTTCAATGGCCAACTTCTATCCAAATAGCTCAGAAGAACAAGGCTGTTTCTACTCTATGATCAGAACTAATAATAATAATAACAATAATTCCTCAGCACCAGAACCCTTAAATGAAGAGATTTTCTGGGATGGTCTTTGTTTCAATGCAACTAATACAACAAGCAAAGCTAATCTGCACAATCTGGTCGTTTCCTAA 729 0.3978 MGCWSIIEEEAGWRKGPWTAEEDRLLIDYVRMYGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIIIELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKSPTDAGEKAKNRLLRRQQFHQQQQKQQQQQQQLQLNMKGIMALLEDNNNDYYKVPSTLCSSMANFYPNSSEEQGCFYSMIRTNNNNNNNSSAPEPLNEEIFWDGLCFNATNTTSKANLHNLVVS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1331 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele18g1331 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Lele18g1331 242 SMART sant 67 115 IPR001005 -
Lele18g1331 242 SMART sant 14 64 IPR001005 -
Lele18g1331 242 FunFam Myb transcription factor 15 67 - -
Lele18g1331 242 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lele18g1331 242 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lele18g1331 242 CDD SANT 72 113 IPR001005 -
Lele18g1331 242 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 180 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele18g1331 242 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lele18g1331 242 Gene3D - 14 67 - -
Lele18g1331 242 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lele18g1331 242 CDD SANT 17 62 IPR001005 -
Lele18g1331 242 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele18g1331 242 FunFam MYB transcription factor 72 151 - -
Lele18g1331 242 Gene3D - 72 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1331 Lele-ChrLele18 10891200 10892393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1331 10 223 MYB Transcription Factor Family AT4G13480 59.130 6.76e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele18g1331 Myb_DNA-binding 2.8e-16 CL0123