Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1278 ATGAGAAAACCCAAATCAAGGGACTTCCACAAGCAGCGACGGCTTGCAGAGGAAGATGAGATTAAACTTTTGGACTCATGGATTCAATCCCAGAAACCAGACTCTGGATCCAACCCCATGTCATTTCCCCCTTTATCCTCCAAAGACCCTGTAGGTCACATTGAAGGCAATACATTTTCGCAATATGTGGGTGTCACGAGGTTTGACCAGTTGCCAATTTCCAAGAAAACCAAGGATGCTTTGTTAGAAGCTAAGTTTGTTAAGATGACTGATATACAGAGGGCTTCTTTGCCCCATGTGCTTTGTGGGCGAGATATTTTGGGTGCATCAAAAACTGGGTCGGGAAAAACCTTGGCTTTCATTATTCCGGTCCTGGAAAAGTTATATAGAGAGAAATGGGGGCCTGAAGATGGGGTAGGCAGCATCATTATATCCCCTACGAGAGAATTAGCTGGTCAACTGTTCGATGTTTTAAAAAGTGTAGGTAAGCACCATAATTTCAGTGCTGGCCTTCTGATTGGTGGTCGCAAGGAAGTTGATGTGGAGAAAGAACACGTAAATGAGCTGAACATTTTGATCTGCACACCTGGTCGCCTTCTACAACACATGGATGAAACTCCTAACTTTGATTGTTCACAGATTCAGGTGTTGGTGCTAGATGAGGCAGATCGGATTCTTGACAGTGGATTTAAGAAGGAACTAAATGCTATAATATCACAGCTTCCAAAGCATAGACAAACCCTACTCTTCTCGGCAACTCAAACAAAGTCTGTTGAAGTTCTTGCAAGACTAAGTTTAAAGGACCCAGAATATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACCCCTCCTCTCTTGAGACAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGATATGTTGTGGAGTTTCATAAAGTCCCATCTTAACTCCAAAATACTTGTCTTTCTTTCTAGCTGTAAACAGGTAAAATTTGTTTTTGAAGCATTTAAGAAACTTCGCCCTGGCATACCCTTGAAATGCCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATATATTCTGAATTTTGTGAGAAGCGCTCAGTACTCTTCTCAACTGATGTGGCTGCAAGAGGGCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCATCTTACATACACAGAGTTGGGAGAACTGCTCGCTACAAGTCTGGGGGTAGATCAGTTTTATTTTTGATGCCTTCAGAGATGAAAATGCTTGAGAAATTAGAAGCAGCTAAAGTTCCAGTACATCTTAATAAGCCTAAGAAGGAACGACTGCAACCAGTTTCTAGTTTGTTAGCAGCATTACTGGTCAAGTACCCAGATCTTCAGCAATGGGCGAAAAGGGCCTTCATAACATATTTGAAATCCATTCATGTCCAGAAGGATAAAGAAATCTTTGATCTCATGAAATTGTCAATTGATGAATATTCAGCATCATTAGGTCTTCCCATGACCCCCAAAACTCGATTTCTTAACCAAAAAATGAAATCTAAAGCTGTGTCAACAAAACCAATTTTATCTGAACCAGAAGATTCCCACAGAGAAATTGCATTGGAGGTTCAAAGAGAGAATCTCGATGTTAATGATTCTGAGGTGGATGAAGAGGAAAAAGGTCTTCTTTTGCCGGATGATTCATCTGATGAAAAGGAAGGGAAAGCACCTGAAATTTTAGATGTCATACCACCAACCCGTGTTTCAAAGAAAAAGAAGCTCAAGATCAACATACATAGACCAATGGGGACTAGGGTTGTATTTGATGATGAAGGTAATGCTCTACCTCCACTAGCGAGGATTGCTGATACACAAACTGGCAAGGAAACATTGCTGCTTGATCCGGAACAAAAAGCTGAATACTATAGAAAGATGCGTGAGGAGTTGAGGAAGGTTGACAAGGAAGATAAGCTTGTGCAACAACAGCGTCAAAGAGAGAAGAGAATCAAGCGAAAGATGAAGTTGAAGGAAAGAAGTGCTGAAGAGGATGATGATGAGAACATTTCTGGATCAGGAGGAGAAGGAGATGAAGTTGCAGATAGAAGGCATAAAAAGAGTAAGATATATTTTGATAGTGACAATGATGATGACACTGAAGTCACAGGAGGGAAAGAGGGTATTATCTCTAAGCCTGTTACGTTGGAGGAGCAAGAAGCATTGGCGCTGAAGTTGTTAAATTCCATGCACTCATAG 2244 0.4131 MRKPKSRDFHKQRRLAEEDEIKLLDSWIQSQKPDSGSNPMSFPPLSSKDPVGHIEGNTFSQYVGVTRFDQLPISKKTKDALLEAKFVKMTDIQRASLPHVLCGRDILGASKTGSGKTLAFIIPVLEKLYREKWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKEVDVEKEHVNELNILICTPGRLLQHMDETPNFDCSQIQVLVLDEADRILDSGFKKELNAIISQLPKHRQTLLFSATQTKSVEVLARLSLKDPEYLSVHQESVTATPPLLRQLVMIVPLDQKLDMLWSFIKSHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGRSVLFLMPSEMKMLEKLEAAKVPVHLNKPKKERLQPVSSLLAALLVKYPDLQQWAKRAFITYLKSIHVQKDKEIFDLMKLSIDEYSASLGLPMTPKTRFLNQKMKSKAVSTKPILSEPEDSHREIALEVQRENLDVNDSEVDEEEKGLLLPDDSSDEKEGKAPEILDVIPPTRVSKKKKLKINIHRPMGTRVVFDDEGNALPPLARIADTQTGKETLLLDPEQKAEYYRKMREELRKVDKEDKLVQQQRQREKRIKRKMKLKERSAEEDDDENISGSGGEGDEVADRRHKKSKIYFDSDNDDDTEVTGGKEGIISKPVTLEEQEALALKLLNSMHS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1278 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Lele18g1278 747 CDD DEADc_DDX10 77 275 - -
Lele18g1278 747 MobiDBLite consensus disorder prediction 650 729 - -
Lele18g1278 747 PANTHER RNA HELICASE 65 568 - -
Lele18g1278 747 Pfam Domain of unknown function (DUF4217) 451 507 IPR025313 -
Lele18g1278 747 SMART ultradead3 85 289 IPR014001 -
Lele18g1278 747 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Lele18g1278 747 Gene3D - 285 527 IPR027417 -
Lele18g1278 747 MobiDBLite consensus disorder prediction 28 44 - -
Lele18g1278 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lele18g1278 747 MobiDBLite consensus disorder prediction 692 720 - -
Lele18g1278 747 MobiDBLite consensus disorder prediction 542 573 - -
Lele18g1278 747 SMART DUF4217_3 447 510 IPR025313 -
Lele18g1278 747 Gene3D - 54 278 IPR027417 -
Lele18g1278 747 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Lele18g1278 747 SMART helicmild6 325 408 IPR001650 -
Lele18g1278 747 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Lele18g1278 747 MobiDBLite consensus disorder prediction 27 49 - -
Lele18g1278 747 CDD SF2_C_DEAD 286 417 - -
Lele18g1278 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 428 IPR027417 -
Lele18g1278 747 Pfam DEAD/DEAH box helicase 90 259 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1278 Lele-ChrLele18 9807180 9812987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1278 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.378 6.62e-39 147