Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1210 ATGCATAGCTGCATCACCTGTCTTACAAATGATGCAAGAAATCATGTTGTGTGTAAGGCTGCTTTTACCTCAGCGGAACTTGATTCTAGGAAACGTTTGTTCAGTAGCAGGGGTAATGCCGATGAAGATGCGTCGGATTTGCCTGGTTTGAAACGGAGAAAGGGTGGTCCTCCATATCAAGATGATGAACAAGCTGTGTCACAGTCATCATTGAATAAGCTTGTTGGAGCAGCTGAAGTCTACGACTTGGAGGAGATGGAAGGACCACGCACACTGATGTGTGATCTAAAGCCTTACCAGAAACAAGCACCTCATTGGATGTCACGACCAGAGAAAGGAACTAATACTAAGAATGCTGAAAGTACTCTTCATCCTTGCTGGGCAGCCTATTGTATTGATGATGAGAGGATTCCCACTATTTACGTAAACAACTTCACTGGGGAGGCAACAACTAAGCTCCCACCTGCATTTCGGTTGCCAAGAGGAATTCTTGCAGATGCTATGGGACTTGGGAAGACTGTCATGATTATTTCTCTAATTCTTGCAAGACAAGGGAGAGGAGAAAATACTGATCTTTCAAGAAAGAGGAACCAAGTTTCTCGCACTGACCCCACATTCAAAGTTGATGGCGGCACTCTTGTTATTTGTCCTATGGCATTGCTAGGTCAATGGAAGGATGAGTTAGAAACCCATTCCAAGATAGGAAGTTTATCCATTTTTGTTCAGTACGGTGGGGATAGAACCAATGATCCTCAGGTGATCTCAGGATATGTTGTTTTAACAACATATCGTGTCCTAGGAAATGCATTTAAAATTTATAGGGAGAACAGCATTTACCATAAGGTCAACTGGCATAGGGTGGTTCTAGACGAAGCTCATTCCATTAAAGCCTATAAGTCATATGGTGCTCAAGCTGCTTTTACACTGGCCTCACACTGCCGTTGGTGTTTTACTGGAAACCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTTTGCTTCTTGCATATTGAACCATGGGGCAATTTTGCATGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAATCAAGGCCATTTTGAAGCCATTGATGTTAAGAAGAGCAAAGGAAACAAAGGATAAGTGTGGAAGGCCCATACTCGTTCTTGCACCAACTGGCATCCAATTAGTTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTGTATAATGCGCTTTTCAGGAAACCTAAACATCAATTCGACGAGTATGTTGGGCAAGGAAAAGTTCTCAGCAACTATGCTAACATTCTTGAGTTATTATTGCGGTTGAGACAATGTTGTAACCATCCGTTTCTGGTCACAAGCCGAAGTGATACAAAGAAACCTGTGGACTTTGACATACTCGCGAAAAGACTACTCAAGTTCAACTGTAATTCTACAAGTCAGGGTGCATATGTTACAGAAGCCATAGAGGCTCTTGGCAGGGGTGAAAAACTAGAATGCCCAATATGCTTAGAATCTGCAGATGATCCTGTGTTCACTCCATGTGCACACAGAATGTGTAGAGAATGCTCACCTTCTAGCTGGAGTGACCAAACCAGTGGTCCTTGTCCTCTTTGTCGTCTGAAACTGAACAAAACTGATCTAATCAATTGTCCCTTTGAGAATCAGTTCGTGTTTACTGATGTTGAGAAGGAATGGAAGGAATCTACCAAGGTTTCAAAGCTTTTGGAACACTTGGAACGAATTCAGCGATATCGCCCTGCAGAAAACAACATTGTTTTCAGCCAATGGACTTCCTGTTTAGACCTGTCCTGTTTAGACCTCCTGGAGATTGCTTTGAAGAAGAAAGGAATTGGTTATTTTAGATTTGATGGGAAACTGCAACAAAAGAACAGGGAAAGAGTTTTGAAGGAGATCAATGAGTCAAGCGAGGAAAGGGTTTTGATGATGTCACTTAAAGCTGGTGGTTTAGGCTTGAATTTGACGGCAGCTTCAAACATTTTCATGATGGATCCATGGTGGAATCCTGCGGTTGAAGAGCAAGCAATTATGAGAATTCATCGTATAGGACAAAAGCAAACAGTTATCGTCAGAAGATTCATTGTCAAGCTAACAAAAGGATACGGTGGAAGAGAGGTTGCAACAAGTGCAGGTGAAGAAGCTGAAGATGATATCTGGAGCCTCACAGGGGATGAGGTTCGGTCAGTTGTTATTACAAACATGTATGCATTGGTGGAACTAGTTTTGAGCCAAGATTTGAGAAGATGGGATGCTTCCAAAGAATCCATGTAG 2304 0.424 MHSCITCLTNDARNHVVCKAAFTSAELDSRKRLFSSRGNADEDASDLPGLKRRKGGPPYQDDEQAVSQSSLNKLVGAAEVYDLEEMEGPRTLMCDLKPYQKQAPHWMSRPEKGTNTKNAESTLHPCWAAYCIDDERIPTIYVNNFTGEATTKLPPAFRLPRGILADAMGLGKTVMIISLILARQGRGENTDLSRKRNQVSRTDPTFKVDGGTLVICPMALLGQWKDELETHSKIGSLSIFVQYGGDRTNDPQVISGYVVLTTYRVLGNAFKIYRENSIYHKVNWHRVVLDEAHSIKAYKSYGAQAAFTLASHCRWCFTGNPLQNSLEDLFSLFCFLHIEPWGNFAWFNKLVQRPYENGDPRGLKLIKAILKPLMLRRAKETKDKCGRPILVLAPTGIQLVECEQSAAEAELYNALFRKPKHQFDEYVGQGKVLSNYANILELLLRLRQCCNHPFLVTSRSDTKKPVDFDILAKRLLKFNCNSTSQGAYVTEAIEALGRGEKLECPICLESADDPVFTPCAHRMCRECSPSSWSDQTSGPCPLCRLKLNKTDLINCPFENQFVFTDVEKEWKESTKVSKLLEHLERIQRYRPAENNIVFSQWTSCLDLSCLDLLEIALKKKGIGYFRFDGKLQQKNRERVLKEINESSEERVLMMSLKAGGLGLNLTAASNIFMMDPWWNPAVEEQAIMRIHRIGQKQTVIVRRFIVKLTKGYGGREVATSAGEEAEDDIWSLTGDEVRSVVITNMYALVELVLSQDLRRWDASKESM 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1210 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 553 IPR013083 -
Lele18g1210 767 SUPERFAMILY RING/U-box 499 554 - -
Lele18g1210 767 MobiDBLite consensus disorder prediction 34 59 - -
Lele18g1210 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 578 733 IPR001650 -
Lele18g1210 767 CDD DEXDc_SHPRH-like 156 377 - -
Lele18g1210 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 708 IPR027417 -
Lele18g1210 767 MobiDBLite consensus disorder prediction 34 68 - -
Lele18g1210 767 SMART helicmild6 611 694 IPR001650 -
Lele18g1210 767 Pfam Zinc finger, C3HC4 type (RING finger) 501 548 - -
Lele18g1210 767 Pfam SNF2-related domain 99 455 IPR000330 GO:0005524|GO:0140658
Lele18g1210 767 Pfam Helicase conserved C-terminal domain 577 694 IPR001650 -
Lele18g1210 767 Gene3D - 157 378 IPR038718 -
Lele18g1210 767 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 47 708 - -
Lele18g1210 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 377 IPR027417 -
Lele18g1210 767 Gene3D - 395 731 IPR027417 -
Lele18g1210 767 ProSiteProfiles Zinc finger RING-type profile. 504 544 IPR001841 -
Lele18g1210 767 SMART ultradead3 141 352 IPR014001 -
Lele18g1210 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 339 IPR014001 -
Lele18g1210 767 SMART ring_2 504 543 IPR001841 -
Lele18g1210 767 CDD RING-HC 504 543 - -
Lele18g1210 767 CDD SF2_C_SNF 569 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1210 Lele-ChrLele18 8982111 8989011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1210 19 748 RAD5 or RAD16-like Gene Family AT5G43530 58.355 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele18g1210 SNF2_N 9e-69 CL0023