Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1188 ATGGAAAACAAGGGGGCTTATGAGAATGATCTCAATCTCAAGGATACAGAGCTCAGATTGGGGTTACCAGGAAGAGAAGAAGAAGAACAACAACAACAATCACTGGTTAGCTCTAAGAACAACAAGAGGCCTTTATCTGAAGCTTCTGAGGACTGTGGGAAAAAGGGTTCTAACGAATCAGCTCCTTCAGCAAAGGCAAAGATTGTGGGGTGGCCACCAATCAGATCTTACAGGAAGAACAGCTTGCAGGAGGCTGAGGCTTCTGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCATACCTCAGAAAGATTGATTTGAAGGTTTACAATGGCTACCCAGAACTCCTCAAGGCTTTAGAAAACATGTTCAAGTTAACCATAGGTCAGTACAATGAGAGAGAGGGTTACAAAGGTTCAGAATTTGCTCCTACATATGAGGACAAGGATGGTGACTGGATGCTTGTTGGAGATGTTCCATGGGACATGTTTATGACTACCTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGATTGGGTTGTGGAGTATGA 561 0.4332 MENKGAYENDLNLKDTELRLGLPGREEEEQQQQSLVSSKNNKRPLSEASEDCGKKGSNESAPSAKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSMDGAPYLRKIDLKVYNGYPELLKALENMFKLTIGQYNEREGYKGSEFAPTYEDKDGDWMLVGDVPWDMFMTTCKRLRIMKGSEARGLGCGV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1188 186 Gene3D - 83 186 - -
Lele18g1188 186 MobiDBLite consensus disorder prediction 1 65 - -
Lele18g1188 186 Pfam AUX/IAA family 50 183 IPR033389 -
Lele18g1188 186 MobiDBLite consensus disorder prediction 27 43 - -
Lele18g1188 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 180 IPR003311 GO:0005634|GO:0006355
Lele18g1188 186 SUPERFAMILY CAD & PB1 domains 80 175 - -
Lele18g1188 186 FunFam Auxin-responsive protein 84 186 - -
Lele18g1188 186 ProSiteProfiles PB1 domain profile. 89 176 IPR000270 GO:0005515
Lele18g1188 186 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1188 Lele-ChrLele18 8674473 8675358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1188 92 182 B3 DNA Binding Superfamily AT2G46530 36.264 7.13e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele18g1188 AUX_IAA 2.1e-53 CL0072