Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1177 ATGATGAACCAAAACGTGGCACTGCCGTGCTCTGCTTCGTGTCTCTGGTCTCATCCCTGGGATCCTCTCCCTCCGTTTTTGTTGTTCAATCCATTTGCACTTCGCTGCTTCGCTTCAGAGACCCGTTTTCTTCTTCACTTCGCTAAACGCCAAAATTCTGATCCGAATCCGTCTGCCTCTCTAAGCTCTTCGGCCTTTGCATCGAACTTCGCTGCTGCTCGTGACCTTGTCTCCTTGCCGTCGCTGTCATTTTCCTCAGCTAATATTTTCTGAAGAAGATTTTTTGATTTTCCAGTTCTATCTTCCACCAAGATGTCTTCGCTTGGCACATCAAAGGGAATCCTGGAGATTGCAAAGTTTGGGATCTACGTGACTGTTCCCATTGTTCTTATGTACACTTTTGCCAACAATACAAAGAACCTCCAGAGATTCATGGGCAATCGGTCTTATATTGAATATCCGCCTGAGGCACCAAGGCCTCCGTCACCTGAGGAGCTCAGGGAGATGGCCCGGGAGCTGGCTCGGAAATCAAACAATCGGAACAGAGAAGAAAGGGAGAAGGATAGAGGGGGAAAATGTTATCATGAAGTTGCTGCTGCTTCTGAGACGGAGATGATAGAGAGTTTCTGCTTAAACAATAATTCTGTAGCTAATTGCTCTGCTCTTCACTACTTTGCATTCCGTTTTGAAGGTTGATTGGAACTCATACCAGTTGGTACAATTCTGGCTGTGCTTACCAATCAGATTTTGAAAACAGCAAATGCGGCAGCTGAAGTTCTTGTCGAAAAAGAAAGTTTTAAGGTTCTTTCACGACACTTGTATGATATTGAACCGGTGCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGACGTGAAGAGGGCAAATAAAGTGGTTGAGAAGTACAGGAACCGTGGTCGTTTTTACCTGCTGCTTAATTGCAGGCACATAGTTCATGAAGTTGAAGAAGTCACAAGAAGCATTGGGAAGTCCCTGGCTGTACTATCACTTGGAAATACTGAAGTCTTATCGCGAATTTCAGATCAGGTTGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTCGAGGCTTCACATTCTCAGCTTCAAATAGTGGAGAGGTTGGACCAGGGCCTTAGGGAGCAGAAACTAGATCAGGCTTTCGCGAATGACATGCTTGAAGAAATCGCTAGGGTGGTTGGTGTGCCGGTAGAGCCCTCAGAGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCTGACAGAAAAGAAAGAGCTGAGGTTTTCTTCTTGGAGCAGGTCATCGAGTTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAAAAATATATAGAGCCGCTTAATTCTTTCCTTTGTTGTATAACCGGGACCGTTATGGTAGATCCTGTAAGCCTTTGCACTGGGACTACTTGTGAGAGATACGCCATTGAGTCTTGGTTTGACCGTGGCATGAGGACCGACCCGGAAACTAAAGAAGTACTCGAAGATACTAAGTTGAGATCTAATGTTCCACTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTAACAATCAGGTCTATCAGGGAAAACCTTTTATCAAATTCTAACTTATCTGTGGTAGAAACCTTGAGACAAGTGCAGGATCTCATAAGTGACAATTCTATAAACAAGGATTGGATTTCTATAGGAAGGCTTACTGACATTATTATCTCTATCCTTGGGAACACTGATAACGGAGAAGTGAAGATCAACATTCTGAGTACTTTGAATGATGTAGTAGAAGGTCACATGAGAAACAAGGAAAAAGTATCAGAATCTCAAGGATGGGATCACATTATTTGCTGCTTGGGCAGCGACTCTAGAATTTCAAAAGCTGCAATTAACTTGTTGTATGAGTTACTGCAAGATCGAACTGGTTGGAATGTGTCTCTCTGCAGAAAACTCTCTCAGCATTATGATGCAATTTCTTCCCTTGTTACCCTTCGAAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGCAGAAAAGATTTTGATGGAGCTTTTTGACATCGATGAGGTTAACATTTGTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTCGATCATATGGTTCAAGGAGTAGAATCTTCAAGAATATCAATGGCGAAAACCATTGTGAATATGGAGCTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATACCTCCTTTGCTTGAAATGCTGTCTGGCAACAGTGAATTGAAAGAAGTCTCGTTATCTGCACTGGTTAAACTATCGGGTTCTCGTGCCAATAAAAGGATTATAGCTGCATCGGGTGGAGTTCCTATTATTCTAGAACAAATGTTCTCTCCTTCTATGCGAACTCTCATTACCATAAAATGCTCTGAAATCCTGGAGAAGCTTTCTGCTGATGATGATGGAATTGATTTCTTTGTTGACAGAGAAGGGAAACAACTGGAGTTAGATTCCATTATCTCCAAATTACTTGCTCTTCAGCAGAGTCCCAACTTGGCCCACAATACCCGCAAACCTTCTTTGCGTGCACTTCTCGGAATTTGCAAGTTTGAGACCGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGTGGCGTATCTCTAATCCTTCCCCTTCTTGATGACTCTGATTCGGAAATCAGAGAGACCGCCATAAACCTTCTCTTTCTTTTCTCCCAACATGAACCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTCGAGGCTTTGGTGGGATTTCTAGAGACTGATGACAACGATGTTCAGATGGCTGCTGCTGGTTTGCTAGCGAACCTACCGAAATCCGAGAAAGAGCTCACCATGAAGCTGATTGCATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACTGGAACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCCACAAACATCGAGTCACAGCGCGATTTGGTTAAGCGTGGAATATATCCTTTGCTCGTGAATTTTCTTCACACTGGTTCGATAACAGCAAAGGCTAGAGCAGCAGCATTCATTGGAGATCTTTCTACGAGCACGCCAATGCTCACACTCGCAGCCAAATCAACAGGCTGCTGCTGGTGTTTTAGATCATCAAGAGTTCCTTTATGCCCAGCACATGGTACTGTATGCAGTGTGAGCAACACATTTTGTCTCCTGGAAGCACAAGCATTGCCTGGTTTGGTAAATCTCTTACGAGGCGAGGTCGATGTAACTGTTTATGAATCAATACAGACACTTTCAACATTGGTTTTGGAAGATTATCCTCAAAGGGGTGCTCGTGTTTTGCACGAATCGAAAGCTATACAACCGCTTCTGGATATTCTGACATGGGGGTCTGATTCTCTCAAGGCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAGGAAATGGTGGAATTCCACGGCGCAACAGCTAGATCGCGGTTGGTCAGTTTAACAGGGAAGAATATATATGGAGAAGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATCGAACGGTATTCGAGATCATCATCTGCTGCTGTTTCAGGAGTTCTTGAGTGA 3738 0.4355 MMNQNVALPCSASCLWSHPWDPLPPFLLFNPFALRCFASETRFLLHFAKRQNSDPNPSASLSSSAFASNFAAARDLVSLPSLSFSSANIFXRRFFDFPVLSSTKMSSLGTSKGILEIAKFGIYVTVPIVLMYTFANNTKNLQRFMGNRSYIEYPPEAPRPPSPEELREMARELARKSNNRNREEREKDRGGKCYHEVAAASETEMIESFCLNNNSVANCSALHYFAFRFEGXLELIPVGTILAVLTNQILKTANAAAEVLVEKESFKVLSRHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLLNCRHIVHEVEEVTRSIGKSLAVLSLGNTEVLSRISDQVDRLQNEMQRVEFEASHSQLQIVERLDQGLREQKLDQAFANDMLEEIARVVGVPVEPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFLCCITGTVMVDPVSLCTGTTCERYAIESWFDRGMRTDPETKEVLEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRENLLSNSNLSVVETLRQVQDLISDNSINKDWISIGRLTDIIISILGNTDNGEVKINILSTLNDVVEGHMRNKEKVSESQGWDHIICCLGSDSRISKAAINLLYELLQDRTGWNVSLCRKLSQHYDAISSLVTLRKGPEEESAEIAEKILMELFDIDEVNICSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELSDSNLNLLGEEGVIPPLLEMLSGNSELKEVSLSALVKLSGSRANKRIIAASGGVPIILEQMFSPSMRTLITIKCSEILEKLSADDDGIDFFVDREGKQLELDSIISKLLALQQSPNLAHNTRKPSLRALLGICKFETGLVKKAVLAASGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLETDDNDVQMAAAGLLANLPKSEKELTMKLIALGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLHTGSITAKARAAAFIGDLSTSTPMLTLAAKSTGCCWCFRSSRVPLCPAHGTVCSVSNTFCLLEAQALPGLVNLLRGEVDVTVYESIQTLSTLVLEDYPQRGARVLHESKAIQPLLDILTWGSDSLKAEALGLLEKVFVSKEMVEFHGATARSRLVSLTGKNIYGEGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1177 1245 SUPERFAMILY ARM repeat 866 1229 IPR016024 -
Lele18g1177 1245 Gene3D - 237 351 IPR036537 GO:0007166
Lele18g1177 1245 SUPERFAMILY ARM repeat 564 945 IPR016024 -
Lele18g1177 1245 SMART Ubox_2 493 556 IPR003613 GO:0004842|GO:0016567
Lele18g1177 1245 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 777 818 IPR000225 GO:0005515
Lele18g1177 1245 Coils Coil 356 383 - -
Lele18g1177 1245 SMART arm_5 1030 1070 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 1104 1144 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 806 848 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 637 676 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 1148 1188 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 766 805 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 944 985 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 902 942 IPR000225 GO:0005515
Lele18g1177 1245 SMART arm_5 987 1027 IPR000225 GO:0005515
Lele18g1177 1245 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 240 1237 - -
Lele18g1177 1245 Gene3D - 564 766 IPR011989 -
Lele18g1177 1245 Gene3D - 767 1085 IPR011989 -
Lele18g1177 1245 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 956 983 IPR000225 GO:0005515
Lele18g1177 1245 Gene3D - 1099 1227 IPR011989 -
Lele18g1177 1245 SUPERFAMILY RING/U-box 477 559 - -
Lele18g1177 1245 Coils Coil 166 187 - -
Lele18g1177 1245 Pfam Pet100 115 185 IPR018625 GO:0005739|GO:0033617
Lele18g1177 1245 Pfam U-box domain 493 558 IPR003613 GO:0004842|GO:0016567
Lele18g1177 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 563 IPR013083 -
Lele18g1177 1245 Coils Coil 291 318 - -
Lele18g1177 1245 ProSiteProfiles U-box domain profile. 489 563 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1177 Lele-ChrLele18 8503024 8512723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1177 493 1200 U-box Gene Family AT1G76390 27.045 9.73e-40 157