Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1157 ATGTCTATGGCGTTTGTGACCAATTTGGAGACAATACAGAAACTTCTGATTGCTCCGAAGAATCTTGGCAAACCAAAGAAAAAGTGGCATTCTGCATTTGTTAGTATATATTGTTACAGAGCTCTCTTGTCTCACTTCAAATCCACTTTGCTTCCCACCACCACCACCACCATCAACAAGAAGAACTGGTCCAAGTTATCTCCTTCTTCCTCCTTCACTGTCATCGATTTAAACACAGATCATTCCTTCAGCGTTACTCAAACCACCCTCACCCATCTCGTTAAGGACAAAGATGTAGAAGCACTCCAGAGTCTTGGGGGGGTCCACGGCGTGGCCTCTGCTCTGAAAACCGACGTGGATCATGGAGTCAGAGGCGGTGATGATGATGATCCCCATGACCTCATGCGACGGCGCGACGCGTTTGGTTCTAACACCTATCCGAAACCACCTACGAGAGGGTTCTTTCATTTTGTGATTGAAGGCTTCAAGGACCCCACCATTCTCATTCTATTGGTCTGTGCTGCTCTGTCTCTTGGCTTCGGCATCAAGGAGAATGGGATCAATGAAGGCTGGTACGAAGGTGGAAGCATCTTCGTTGCAGTTTTTCTCGTCATTGCTGTATCTTCCATTAGCAACTTCAGACAGAATAGACAATTCGAGAAGCTGTCTCAGGTTAGCAACAACATCCAAGTGGATGCTGTACGAAGGGGTCGCCGGCAACAAGTTTCGATATACGACATCGTCGCGGGTGATGTTGTTTTACTGAAGATTGGAGACCAAGTTCCTGCTGATGGCTTGTTCTTGGAAGGCCATTGTCTGCAAGTTGATGAGTCCAGCATGACAGGTGAGAGCGACCACGTAGAGATTAATGGCGACCAGAACCCATTCTTGTTTTCTGGGACAAAGGTGGCTGATGGGTTTGCCAAAATGCTCGTTACTTCCGTTGGCACGAACACGGCATGGGGTCAAATGATGGGTTCCATAAGCAGAGACAACAATGAAGAAACCCCATTGCAAGAACGCCTCAATAAGCTTACTTCTGCGATAGGCAAGGTTGGTTTGGCTGTGGCTTTTCTTGTTCTTGTTGTTATGTTAGTTCGCTACTTCACAGGGAACACAACCGATGAGAATGGGAACAAAGAGTTCAACGGAAGCAGAACCAAGTTTAATGACATAATGAACGGAGTTGTGAGAATTGTTGCCGCTGCTGTAACTATTGTGGTGGTTGCGATACCAGAAGGGCTTCCTTTGGCTGTGACTTTGACACTTGCTTATTCCATGAAGAAGATGATGGCTGATATGGCTATGGTGAGGAAGCTCTCTGCTTGCGAGACTATGGGCTCTGCTACAACCATTTGTACAGATAAGACGGGGACACTCACGCTTAATCAGATGAAAGTGACGAAGTTCTGGCTTGGACAAGAACCTATGGAAGAGAAACCTCTTGAATCTTCAGTTCATTCAGGTGTTCTTCAACTGATCAAAGAAGGGGTTGCGCTTAACACTACAGGTAGTGTTTACAAGTCTAATAAATCAACAACTTCTGAATATGAGCTTTCAGGTAGTCCAACAGAGAAGGCCATTCTTTCGTGGGCTGTTCTTGATTTGAACATGAACATGGAGGAATTGACGCAAAGTTGTGCCATCCTTCATGTCTAA 1659 0.4587 MSMAFVTNLETIQKLLIAPKNLGKPKKKWHSAFVSIYCYRALLSHFKSTLLPTTTTTINKKNWSKLSPSSSFTVIDLNTDHSFSVTQTTLTHLVKDKDVEALQSLGGVHGVASALKTDVDHGVRGGDDDDPHDLMRRRDAFGSNTYPKPPTRGFFHFVIEGFKDPTILILLVCAALSLGFGIKENGINEGWYEGGSIFVAVFLVIAVSSISNFRQNRQFEKLSQVSNNIQVDAVRRGRRQQVSIYDIVAGDVVLLKIGDQVPADGLFLEGHCLQVDESSMTGESDHVEINGDQNPFLFSGTKVADGFAKMLVTSVGTNTAWGQMMGSISRDNNEETPLQERLNKLTSAIGKVGLAVAFLVLVVMLVRYFTGNTTDENGNKEFNGSRTKFNDIMNGVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADMAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGQEPMEEKPLESSVHSGVLQLIKEGVALNTTGSVYKSNKSTTSEYELSGSPTEKAILSWAVLDLNMNMEELTQSCAILHV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1157 552 Gene3D - 160 449 - -
Lele18g1157 552 SUPERFAMILY Calcium ATPase, transmembrane domain M 106 447 IPR023298 -
Lele18g1157 552 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Lele18g1157 552 Gene3D - 134 329 - -
Lele18g1157 552 FunFam Calcium-transporting ATPase 201 329 - -
Lele18g1157 552 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 548 IPR023299 GO:0000166
Lele18g1157 552 SUPERFAMILY Calcium ATPase, transduction domain A 230 327 IPR008250 -
Lele18g1157 552 SMART Cation_ATPase_N_a_2 101 182 IPR004014 -
Lele18g1157 552 Pfam E1-E2 ATPase 230 431 - -
Lele18g1157 552 PRINTS P-type cation-transporting ATPase superfamily signature 276 290 - -
Lele18g1157 552 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Lele18g1157 552 PANTHER CATION TRANSPORTING ATPASE 73 552 - -
Lele18g1157 552 Gene3D - 463 530 IPR023299 GO:0000166
Lele18g1157 552 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 493 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g1157 552 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 197 370 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g1157 552 Gene3D - 450 462 IPR023214 -
Lele18g1157 552 Pfam Cation transporter/ATPase, N-terminus 106 177 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1157 Lele-ChrLele18 8217488 8219146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1157 12 552 Primary Pumps ATPases AT3G22910 62.936 0.0 600