Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1133 ATGGACACACCAGAGAGGAACCAGATCGGCACTCCCATCTCCAAATTTGAGGATTCACCCGTCTTCAACTTTATCAATAGTCTTTCTCCTATAAAGCCTCTTAAGTCTGTTCATAGTGTTCAGACTATCAATTCACTCAGTTTTTCATCTCCTCCATCTGTGTTTACATCACCCCATGTCACCTGTCACAGGGAATCTAGATTTCTCAGGAGGCATAACGTTTTAGATGCATCAAAGCACAAGGTTTTGCCTGGAGATAGGAAAAAAATATGTTCAAGTGAAGAAGCTCTTTCAGATTCAGCTCATGCATATCATAACTCAAGTGAGCTACAAGGAAATGCTGATCAAGGGATTCCCCTGCAAGATTCAACAATTGAGCCATCTAATGAGCACTCAGAGTTTCCAATTGAGCTACCACAAACCTTAAAATATGATTGTGGTAGCCCGGCTTGTGATCCTCCACCCGGTGTTGATGAGACAAATTCTTTTCTGGATTTGTCGAGTAAGGCAGCATCAGATGTTGCCTATGTTGATGAAGCCTGTGAAAAAAATTCATCTGAGACTGTAGTTTTACTTCCAGGAATATGTCAAATAGAGCCAAGAATTGGAGCCTCAGGATGTGACTGGGATGGTTTACTTTCAGATGCTACTGATCTATTAATTTTCAACTCTCCAAACGAAAGAGAAACTTTAAAGGGTCTAATGCAGAAATCATTTGATCCCACGGGACGGTTTAGCAATTCTATGTCTCAGTTGCCACAAACTACCTTAATTCATGGTGAGAAAATGCGAATTGTTGATCCAGCTGCTTCTGGTTCAGAAGTTGAGACTGAAGGTTATCCTTCTCAACCAGGAGAAGACATTGACAATGATCAGGCACGGGACAATCTTGCTAACACTGCTGGGATGGGTGGCAATCCTAATAATACAATGGATAATCAGCTTATTTCAATAACACGCCATGGCATACGGAGGCGTTGTCTAGACTTTGAGATGGTTGGAGGAAGAAGGAAGAACTCCAATGATGGTTCAAATAACAGTAGTTCCAGCACATTACAATCTGATGAGAGGAATGTCGCTAATGATAAGCAACTGCTTCCTGCAAAACGCAATGGTAATTCACAGAGGTGCATTTTGCCTGGAATTGGCTTACACTTGAATGCTCTTGCCACCATAAAAGATTACAAAATCTTAAAAGTTGAAAATATATCTTCTGGAAGACAACTCAGTCTGCCTAGCCCTGCCTTGCAACAATCTTCAAGCCAAGAACATAGTCTAGCATTGGTACCTGTATCAACAGAAGGAGATTCAGATCTGCCAGACAATGTGTTTCAGTCTGCGGAAGATTGTTCCCAGCCCTCAGGATATGTGGTTGATGAAGATTTCAACCAGAATAGCCCCAAAAAGAAAAGACGTAAGTTGGAGCCAGCTGGAGATGGTGAGTCTTGTAAGCGTTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCTTGCTCTTGCCAAGATTGCTTCAACAAGCCGATTCATGAGGATACGGTTCTTGCAACTCGCAAGCAGATCGAGTCTCGTAATCCTCTAGCCTTTGCTCCTAAAGTCATTCGAAGCTCTGACGCTGTACCTGAAATTGGGGATGATCCCAACAAAACTCCAGCTTCGGCACGGCACAAAAGAGGATGTAACTGCAAGAAATCGAGCTGCTTAAAGAAATATTGCGAATGCTATCAGGGCGGTGTTGGTTGCTCCATCAGCTGTAGATGTGAAGGGTGCAAGAATGCGTTTGGTAGAAAGGATGGCCCCGTTCCTATTGGAATAGAAGCTGAACCAGAAGAAGAAACCGAATCATCTGAGAAGGCTGTGGTCGAAAAACCCTTGCAAAAATCTGAGATCCAGAACAATGAAGAACATCCAGAGTCTACTCTTCCTACGACACCATTACGTATTTGCGGACCATTGCTTCCTCTATCATCATTTTCATCAAAGGGAAAACCACCGAGATCCTCTTTCATTACTACCATACCAGCTTCTGGATTGTATGCCAGCCAAAAACTCGGGAAACCCAGCATCCTTCGGTCTCAAGCCAAGTTCGAAAAGCAGTTTAAACCCATTTCCAACGACGAAATGCCGGAGGTTCTCCGGGGGGACGGATCTCCAAGCATCAAGACATCATCTCCAAATGGCAAGAGGATCTCCTCTCCTAACTGCGACTTTGGATCATCGCCGGGTCGCAGAAGTGGCAGGAAGTTGATATTACAATCCATCCCATCATTTCCTTCTCTCACTGCTCCTCATATTTAG 2334 0.4344 MDTPERNQIGTPISKFEDSPVFNFINSLSPIKPLKSVHSVQTINSLSFSSPPSVFTSPHVTCHRESRFLRRHNVLDASKHKVLPGDRKKICSSEEALSDSAHAYHNSSELQGNADQGIPLQDSTIEPSNEHSEFPIELPQTLKYDCGSPACDPPPGVDETNSFLDLSSKAASDVAYVDEACEKNSSETVVLLPGICQIEPRIGASGCDWDGLLSDATDLLIFNSPNERETLKGLMQKSFDPTGRFSNSMSQLPQTTLIHGEKMRIVDPAASGSEVETEGYPSQPGEDIDNDQARDNLANTAGMGGNPNNTMDNQLISITRHGIRRRCLDFEMVGGRRKNSNDGSNNSSSSTLQSDERNVANDKQLLPAKRNGNSQRCILPGIGLHLNALATIKDYKILKVENISSGRQLSLPSPALQQSSSQEHSLALVPVSTEGDSDLPDNVFQSAEDCSQPSGYVVDEDFNQNSPKKKRRKLEPAGDGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSSDAVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGPVPIGIEAEPEEETESSEKAVVEKPLQKSEIQNNEEHPESTLPTTPLRICGPLLPLSSFSSKGKPPRSSFITTIPASGLYASQKLGKPSILRSQAKFEKQFKPISNDEMPEVLRGDGSPSIKTSSPNGKRISSPNCDFGSSPGRRSGRKLILQSIPSFPSLTAPHI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1133 777 MobiDBLite consensus disorder prediction 729 751 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 334 358 - -
Lele18g1133 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 484 519 IPR005172 -
Lele18g1133 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 570 605 IPR005172 -
Lele18g1133 777 ProSiteProfiles CRC domain profile. 482 607 IPR005172 -
Lele18g1133 777 MobiDBLite consensus disorder prediction 614 657 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 712 777 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 294 310 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 106 131 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 270 310 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 451 479 - -
Lele18g1133 777 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 773 IPR044522 GO:0003700
Lele18g1133 777 MobiDBLite consensus disorder prediction 338 358 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 106 130 - -
Lele18g1133 777 MobiDBLite consensus disorder prediction 463 479 - -
Lele18g1133 777 SMART CXC_2 481 522 IPR033467 -
Lele18g1133 777 SMART CXC_2 567 608 IPR033467 -
Lele18g1133 777 MobiDBLite consensus disorder prediction 626 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1133 Lele-ChrLele18 7910881 7915761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1133 16 776 CPP Transcription Factor Family AT4G14770 43.226 7.62e-161 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele18g1133 TCR 1.9e-11 No_clan