Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1111 ATGCCTTCAGTTGCAGATGATCCAAAAGGATCCATTTGTGTTTTTGTTGGTGGCATATGTTTTAAGTGGCTTGTCTACATTTTGATGGTCAGATTGTTTTCTTTGTTGTTGTTATTGCTGCTGCAGTCTCTTGTAGCGAACGAGGATTTTCAGCACATTCTTCGTGTTCTAAACACGAATGTAGATGGTAAACAGAGGATCATGTTCGCCCTTACCTCCATCAAAGGTATTGGTCGTCGCTTCGCCAATATCGTCTGCAAGAAAGCCGACGTCGATATGAACAAAAGGGCTGGTGAAATATCGGCTGCTGAACTTGATCAGCTAATGACAATTGTGGCAAATCCACGCCAATTCAAGATTCCGGACTGGTTTCTTAACAGGAAGAAGGATTACAAAGATGGTAAATACTCCCAGGTTGTTTCCAACGCATTGGACATGAAACTCAGGGATGATCTTGAGCGTTTGAAGAAAATCAGAAACCACCGTGGTCTGCGACACTACTGGGGTCTTCGAGTTCGTGGACAGCACACCAAGACCACAGGACGCAGGGGGAAGACTGTTGGTGTCTCTAAAAAGCGTTAA 582 0.4433 MPSVADDPKGSICVFVGGICFKWLVYILMVRLFSLLLLLLLQSLVANEDFQHILRVLNTNVDGKQRIMFALTSIKGIGRRFANIVCKKADVDMNKRAGEISAAELDQLMTIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1111 193 Gene3D - 42 121 - -
Lele18g1111 193 FunFam 40S ribosomal protein S18 133 184 - -
Lele18g1111 193 ProSiteProfiles Ribosomal protein S13 family profile. 56 186 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele18g1111 193 Gene3D 30s ribosomal protein s13, domain 2 133 183 IPR027437 -
Lele18g1111 193 Pfam Ribosomal protein S13/S18 55 183 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele18g1111 193 SUPERFAMILY S13-like H2TH domain 54 189 IPR010979 GO:0003676
Lele18g1111 193 Hamap 30S ribosomal protein S13 [rpsM]. 53 193 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele18g1111 193 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 43 193 - -
Lele18g1111 193 FunFam 40S ribosomal protein S18 42 121 - -
Lele18g1111 193 ProSitePatterns Ribosomal protein S13 signature. 162 175 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1111 Lele-ChrLele18 7717628 7721620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1111 43 193 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.364 3.13e-106 300