Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1110 ATGGAACCGGGCATGAGATCAGCTGGTCCTTCTGGGGTTGTGGTGAAGAGCAGGAACTCCTCGGGCTGTTTAATTGTTAGAAAGAAAGGAGATGGGTTGGGTGGTGGATATGGTTCTTCAAGCAGCTCTCGAAAGTTGTATGAGTCAAAAGTTAGGAAAAGGCCTAGTTTGGCTCTGAGTGATTCAGAATCAAGCGATGATGAGTTGCCGATTCCTCCAAGTAGATGGCTTGGTCCTGAGACTATTCGAGCCTGTAATGGATTTACTGCTTCAGAGCGTGGTATAGTGGAAGGCAATGAAACTGGTAGAAAGAGGGATAGAATGATGCAAATCAGGCGTAATGAGGATGCTATGATTGAGAAGAATGTGTTGGAGCAGAGGGAAAGAAAGAAGACTAAAATGGAACCTTTTGATTTTTATGAACATGATGGTATGGATGTGGAGAAGATGAAAAGGAGGTTTCTTTATGACAATGATGGAATTGGTTTCAGGGGACGAAGGTTTATGGGACCAATGCATGCCGCAACAAGTAGCAGACACACTCTTGATGATAGAAACAACTCCTATTATGGCAGGCATAGTGGATTGTATCTGGGAGATACTGTTGACTCCAGCAGGTTCAATGTGAATAGGGATGATTCTCCCCCACGTCTACCATTGCTGAAAGATAAGTTTAAATCAAGTGAGATCATCAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTCATGGTTAATAGGAATAAGGTGGGAGGCCCATCATCAGAGTACTATAATCACCACAAACCTATAGAAAACAGACAGAATTTGGAGACTGAGGCCCCTATGAAGAGGAATATTCCTGTCCATTCTTCATCATACTTAGAAACAAAACTCGTTGAGAAGCCAGGTTTATTTGGTAGGCCTGAGAAAAAACGGATAGCATCAAGAAAATCTTTGTCAATTAAGGAAAGCAAGGGACATGATTGGGACTCTGAGGACAGTGATGCACCATTGAATCAAGGACTAGAAGTTACTAAACCCTTCAAGTCTATGAAGAGAGTAGGTTCTGAGGATGAAAAGACTCCTTTACGTGAGAAGCTCCCAACTCAAATAATAAAAGAAGGAAAGGAAGGAAAAGAAGGAAAAGTAAGGCGCGGGAGTGGTACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTTAGCTCAGGTTGGACTATAGATTATCGGCCTCGAAGGAACAGAGACTATCTGGATGCAGTTTACATCAATCCAGGGGGTACAGCCTACTGGTCAATAATCAAAGCATATGATGCTCTTCAAAAGCAATTGAATGGTGATGATAATGAGGCCAAGCCTGTGGGTGATGGTTCTTCCTTTGCTCGTATCTCAGATGAAGTGCTGAGTCAATTAACAAGGAAAACTCGGAAAAAGATGGAAAGAGAGTTGATGAAGAAGCAAAGAGATGGTAGTGAGAGTGATAGTGAAATGGAACCCAACCTTAAAAGATCTGCCAATTTCAGGCATGATGTGAATAGCATGGACAGTGATAGCAATGAAGAGAAATTAAGCTCTTTTATGAAGCAGGGAACTAATTCAACCAAAAATAAGACGATTGAAAATGTTGCCAGTGTTAGCTTTAAATCCCAGAAATCAACCCATCAATTACATGATGGAACTGAAAATTCGTTGTCTGGATGTGATCCTCATCAGCCACATGGGAGGAAAAGTAGAAAACATGGAAGATGTACTTTGGTAATCCGTAGTTCTAATAAGGGAGCGAATTCAGAATCTGATGGCTTTGTTCCATATACAGGCAAAAGAACGGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTCAGTTGAGCCAAAAGGTTCAGTACCGCAAACGAAAACGAGTGATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGATGTTGCAGCAAAATCCTTACAGTTTCCAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCAAAATATATATTTGGATTCAGGAGTATCACTTCTACAGTGCCAAATAGATGCATGGTGGAGACAGGATAATTCAGATAAAATTAGTTTTCATTCTGTTGATGTTGATGGCAATGATCCAAATGATGACACTTGCGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATGCTTCCTCCTGGTGAGTGGCATTGTCCAAAGTGCACCTGCAAATTTTGTGGAATAGCCAGTGGGGCTGTTAAAAAAGGAGATGCTGCTGCTGTGTATGCTCTTGTCACTTGCAACTTATGTGAGAAAAAATACCATGAATCTTGCACTAAGGAGATGGATGCTGTTTCTATCGACTCCAATATGCCAGGCTTTCATTTTTGTGGAAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTAGGCACCAAGCATGAGATAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAGCAGATGAAGACTCAGAGGCAGCTGGTAGAGGAATTTTTCAAAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTCACTGTGATGGATGAATGCTTTTTACCCATTGTTGATCGGAGGAGTGGCATCAGTTTAATTCATAATGTTCTATATAATAGTGGATCGAACTTCAGTAGGTTGAATTATAGTGGCTTTTATACAGCTATTCTGGAGAGGGGCGATGAGATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTGGTGGAGATGCCATTTATTGGAACTCGCCATATATACAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATCGAATCGGCCCTCTACTCTATGAAGGTTGAGAAAATGGTTATTCCAGCAATTGGTGAACTCACACAAACATGGACAGAAATTTTTAGCTTCACGCCTCTTGAAGAATCACTCAGGCAAGTAATGAGATCATTGAATATGCTGGTCTTCCCTGGTATAGATATTCTGCAAAAGTTGCTTGTGGATCAAGGAAACTTTGAAGGGAACACAACTTCCACAGGTGCTGATAAAATGGACCATGGAAACAAAGTTTATGCTAAGCCAAAATTGGCTAATTCCTCATCTAATCTAGATCCTGATGGAAGCGATGACGTCGGTTTAGATCCTCTTAATGAGATAGAAAATGACAATAGTGATGGTTCTTTAGATCAAATCAATCAAGTTTTGTCTGACAAGATTGTATGTTCCAAATCCTGTCCTGAGGATAGGCTATCTGACTCATCTTCAGATAGATGTTCTTCTCCCTCTAATACCAGTCATGATATTCTGGAGATGGAAAATAAAGCGGTGGCTTCTCCGTCAATGAAAGATAATCTGCATATGTCTATCGACTGTCAGAGCAATCCTCTGAATGACCCTTCTATTGATATACATCCGTCAGATGCTCCAGATGGCCCCGAAAATCACACTTTGGTTCAGAGAGCTGCTACTTCCGATCCCAATTGGACCAAAAACCCGGTTGAACCTGTTTCTGACTGGGAAGGACATTTGCCTACTGCTATAAATGGTGATTCATCTGAGCATGAGATGAACCTGATGTTGGATTCTCAAATGATGGATAATAATACTACCTCTTTTAGGGGGGTTCACATGAATAATTTTCAAGAGGTTCATGAAGCTGTTCCTTCAGGGAGTTTGTCTGAAGACGATGTTACCAACAATAACAATGAAAATACAGATGCGTCTGATTCTGATCTCAACCATGCAGACAAGAACGAAATTGAGTATGAAGGGGAAAGAAATCTATATATGGACGCCGAAGTCGCTTCAAAAGAAATGCAATTTTATGGAAGTGGCATTAATGCATCCAGTGATAGTTCTGAGACTGATTCGGAGTAA 3912 0.4154 MEPGMRSAGPSGVVVKSRNSSGCLIVRKKGDGLGGGYGSSSSSRKLYESKVRKRPSLALSDSESSDDELPIPPSRWLGPETIRACNGFTASERGIVEGNETGRKRDRMMQIRRNEDAMIEKNVLEQRERKKTKMEPFDFYEHDGMDVEKMKRRFLYDNDGIGFRGRRFMGPMHAATSSRHTLDDRNNSYYGRHSGLYLGDTVDSSRFNVNRDDSPPRLPLLKDKFKSSEIIRVQGKNGVLKVMVNRNKVGGPSSEYYNHHKPIENRQNLETEAPMKRNIPVHSSSYLETKLVEKPGLFGRPEKKRIASRKSLSIKESKGHDWDSEDSDAPLNQGLEVTKPFKSMKRVGSEDEKTPLREKLPTQIIKEGKEGKEGKVRRGSGTEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNGDDNEAKPVGDGSSFARISDEVLSQLTRKTRKKMERELMKKQRDGSESDSEMEPNLKRSANFRHDVNSMDSDSNEEKLSSFMKQGTNSTKNKTIENVASVSFKSQKSTHQLHDGTENSLSGCDPHQPHGRKSRKHGRCTLVIRSSNKGANSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWWRQDNSDKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIQMLPPGEWHCPKCTCKFCGIASGAVKKGDAAAVYALVTCNLCEKKYHESCTKEMDAVSIDSNMPGFHFCGKECKELFEHLKKYLGTKHEIEAGFSWSLIHRADEDSEAAGRGIFQRVECNSKLAVALTVMDECFLPIVDRRSGISLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLVEMPFIGTRHIYRRQGMCRRLFSAIESALYSMKVEKMVIPAIGELTQTWTEIFSFTPLEESLRQVMRSLNMLVFPGIDILQKLLVDQGNFEGNTTSTGADKMDHGNKVYAKPKLANSSSNLDPDGSDDVGLDPLNEIENDNSDGSLDQINQVLSDKIVCSKSCPEDRLSDSSSDRCSSPSNTSHDILEMENKAVASPSMKDNLHMSIDCQSNPLNDPSIDIHPSDAPDGPENHTLVQRAATSDPNWTKNPVEPVSDWEGHLPTAINGDSSEHEMNLMLDSQMMDNNTTSFRGVHMNNFQEVHEAVPSGSLSEDDVTNNNNENTDASDSDLNHADKNEIEYEGERNLYMDAEVASKEMQFYGSGINASSDSSETDSE 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1110 1303 SMART PHD_3 752 811 IPR001965 -
Lele18g1110 1303 SMART PHD_3 710 751 IPR001965 -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 46 61 - -
Lele18g1110 1303 ProSiteProfiles Zinc finger PHD-type profile. 708 753 IPR019787 -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 302 333 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 544 578 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 1039 1073 - -
Lele18g1110 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 799 IPR013083 -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 1237 1253 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 25 76 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 469 497 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 1 20 - -
Lele18g1110 1303 PANTHER PHD FINGER PROTEIN 12 369 1290 IPR042163 GO:0003714|GO:0045892
Lele18g1110 1303 CDD PHD2_CHD_II 711 750 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 1232 1265 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 302 327 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 544 562 - -
Lele18g1110 1303 MobiDBLite consensus disorder prediction 1090 1110 - -
Lele18g1110 1303 Pfam PHD-finger 711 753 IPR019787 -
Lele18g1110 1303 SUPERFAMILY FYVE/PHD zinc finger 700 757 IPR011011 -
Lele18g1110 1303 Pfam Tify domain binding domain 633 683 IPR032308 -
Lele18g1110 1303 ProSitePatterns Zinc finger PHD-type signature. 711 750 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1110 Lele-ChrLele18 7711612 7717542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1110 1 1032 PHD Transcription Factor Family AT4G14920 48.197 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele18g1110 TDBD 1.1e-21 No_clan