Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1101 ATGGCGAATCATTTCCAGAACGGTATTGAAACGGCTAAGCTTGTTTGGTCGCGAATTCCGAACTCGGAGGAATCCCAGGACCCGGACGACACCGTTGGCTTGTTGAAGGAGAGTGATGGAAGTGGCGTTGAGAGCCTTGATTATGAAGTCATAGAGAATTATGCTTATCGGGAAGAACAGGCACTAAGAGGGAAGCTCTATGTGGGCTATTTGTTGGTGGTGAAATGGTTCTTTGCTTTGCTCATAGGCATTGGTACTGGAATTGTTGCCGTTTTCATCAATATTTCTGTTGAAAACTTCGCTGGCTGGAAGTTTTCATTGACATTTCATATAATTCAGAAATCCTATTTGGCGGGCTTTCTTGTATATGTCCTGATCAACTTGGTTTTGGTCTATTCCTCTGTATATATTATTACACAATTTGCTCCAGCAGCAGTTGGATCTGGTATTCCTGAAATTAAGGGCTACTTGAATGGAGTTGATATTCATGGCATACTTCTTCTCAGAACCTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGTAAAGAAGGCCCTCTTGTGCATACTGGTGCTTGCATTGCTTCTTTGCTTGGACAAGGTGGATCTACCAAGTATCATCTAAATTCAAGATGGTTTCAAGTATTCAAAAGTGATCGGGATCAGCGAGATCTTGTAACCTGTGGATGTGCGGCTGGAGTAGCTGCTGCATTTAGAGCTCCAGTTGGTGGTGTTTTGTTTGCACTGGAAGAGGTAACATCTTGGTGGAGAAGTCAACTGATGTGGCGTGTCTTCTTCACTTCCGCTGTTGTGGCTGTAGTGGTGCGTACTGCAATGGGGTGGTGTAAGAGTGGAAAGTGTGGACATTTTGGATCGGGTGGATTCATCATATGGGATATATCAGGTGCTCAAGAGGATTATTCCTTTGCTGAGTTACTGCCAATGGCTGTTATTGGGGTTATTGGAGGACTGCTAGGAGCCTTGTTCAACCAGCTTACTCTTTATGTGACTTCTTGGCGTCGAAATCATCTGCACAAGAAAGGGGGCCGAGTCAAGATTGTGGAAGCATGTCTTGTCTCCTTGTTAACTTCAGTTATTTCATTTGGTTTGCCACTCCTAAGAAAATGTAGTCCATGCCCTGTATCTGATCCTCATTCTGATTCTGTTATTGAATGTCCTCGACCACCTGGAATGTATGGAAATTATGTAAATTTCTTCTGTAGCAAAGACAAGGAATACAATGATCTTGCCACAATTTTCTTCAATACACAGGATGACGCCATAAGGAATTTGTTTAGTGCAAAAACAATACACGAGTACAGTCCCCAAAGTTTATTGACCTTTTTGGTTATGTTTTATACTCTAGCAGTTGTAACATTTGGTACTGCAGTTCCAGCTGGTCAATTTGTTCCTGGAATTATGATAGGATCAACATATGGACGTCTTGTTGGCATGCTTGTTGTAAAATATTATGGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTATTGGGAGCTGCATCTTTTCTTGGAGGTTCGATGCGAATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATAACAAATAACTTAAAACTTTTACCTCTTATTATGCTTGTTCTCCTTATATCCAAGGCTGTGGGTGATGCTTTTAATGAGGGCTTATATGAAGAGCAGGCACGACTAAAGGGAATTCCATTGCTGGAATCAAAGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAGGCCTGTGGGAGCAGAAGGGTGGTTTCTTTCCCTCGTGTTGTCAAGGTTGCAGATGTAGTTTCCATTCTGCGGAGCAATGATCACAATGGTTTTCCTGTCATTGATCACACAAGAAGTGGAGAATCACTTGTTATTGGATTAGTGCTTCGGAGTCATCTATTGGTAATTCTACAGTCAAAGGTTGATTTCCAGCATATTCCAATACCTGGTGATACCCGAGGCAAGGCCAACCCAGTAAGGCATCATTCTGGTGAATTCACAAAGCCTGTTTCTAGTAAAGGAATCTGTATAGATGATATACATCTAAGTTCAGATGACTTAGAAATGTACATAGATCTTGCCCCATTTTTGAACCCCTCACCATATATTGTACCTGAGGATATGTCTTTGACAAAGGTCTACAATCTTTTCCGGCAACTAGGTTTGAGGCATTTATTTGTTGTTCCACGCCCATCTCGTGTTCTTGGTTTGATAACCAGAAAAGATCTGTTGATTGAGGACAACGAAAATGTGAATACAATACAGCTCCAGTCAACTAGCATAATGATTCTGCAACAAGATGACAAGGGATGCCAGATGCTGAAATGACATGAATTAGGAGTCTCTAATGCAGCATTGCATGATTTGAACAACTCATTTGTCACTCTCATCACATTGTGGTACTGA 2436 0.4175 MANHFQNGIETAKLVWSRIPNSEESQDPDDTVGLLKESDGSGVESLDYEVIENYAYREEQALRGKLYVGYLLVVKWFFALLIGIGTGIVAVFINISVENFAGWKFSLTFHIIQKSYLAGFLVYVLINLVLVYSSVYIITQFAPAAVGSGIPEIKGYLNGVDIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFQVFKSDRDQRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISGAQEDYSFAELLPMAVIGVIGGLLGALFNQLTLYVTSWRRNHLHKKGGRVKIVEACLVSLLTSVISFGLPLLRKCSPCPVSDPHSDSVIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSPQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMLVVKYYGKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLKGIPLLESKPKYEMRNMTAKEACGSRRVVSFPRVVKVADVVSILRSNDHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHIPIPGDTRGKANPVRHHSGEFTKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDNENVNTIQLQSTSIMILQQDDKGCQMLKXHELGVSNAALHDLNNSFVTLITLWY 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1101 811 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Lele18g1101 811 Pfam CBS domain 708 754 IPR000644 -
Lele18g1101 811 Pfam CBS domain 595 647 IPR000644 -
Lele18g1101 811 Gene3D - 583 760 IPR046342 -
Lele18g1101 811 SUPERFAMILY Clc chloride channel 53 577 IPR014743 -
Lele18g1101 811 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele18g1101 811 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele18g1101 811 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele18g1101 811 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele18g1101 811 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele18g1101 811 ProSiteProfiles CBS domain profile. 593 653 IPR000644 -
Lele18g1101 811 ProSiteProfiles CBS domain profile. 707 764 IPR000644 -
Lele18g1101 811 CDD CBS_pair_voltage-gated_CLC_euk_bac 594 754 - -
Lele18g1101 811 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 26 759 - -
Lele18g1101 811 FunFam Chloride channel protein 699 788 - -
Lele18g1101 811 Gene3D Clc chloride channel 69 576 - -
Lele18g1101 811 FunFam Chloride channel ClC3 67 389 - -
Lele18g1101 811 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 Pfam Voltage gated chloride channel 133 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele18g1101 811 CDD ClC_6_like 44 575 - -
Lele18g1101 811 SMART cbs_1 596 648 IPR000644 -
Lele18g1101 811 SMART cbs_1 710 758 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1101 Lele-ChrLele18 7603246 7613953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1101 1 775 Ion Channels AT5G26240 82.732 0.0 1237