Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1086 ATGGCTTCTTCAGCGAGCAGAGCATTAAAATCACTCCCTAAACATCATACTTCAAGCGCAAGCAATCGCAGAACCCATCATGGAACACCCTCAATCACCAAACCTTTTGCTTGTTGCTCCCATTCCACAAAAACCTTCTCCAATTCTCTCCTCTACCAATCGGAAATCCAAAGGAGTAGCTATATTCAAACCTTTGGTTTCGTCCTTGTCATCGACGAGCCCACATTTCTGGCTATAGGTTACAGTGAAAACGCGCGCGATTTTCTGGGTCTTGATGCTCCGCAATCAGTTCCAAATCTGGAGAACTCTGAAACTCTCGAGATTGGGTCCGACGTTCGGAATTTCTTCACCCCATTTAGTGTGCTTCAGCTTGAAAAGGCATTTGAAGCTCAAGAACTGTCACGGTTGAACCCCATTTGGGTTCGTTCTAAGAATTCGGGGAAGCATTTCTATGCGATTCTACATAGGATTGATGTCGGGGTTGTGATTGATTTCGAGCCTGCCAGAACAGAGGATCCTGAGTTATCCATTTCTAGGACAATGCAATCTCAGAAGCTAGCAGGACGAGCAATTTCGCGGTTTAAATCATTTCCTGGTAGGGATATTAATCACCATTGTGATATTCTAGTTCAAAGTGTCAGAGAACTTACAGGCTATGATAGGGTAATGGTTTACAAATTTCATGAACATGGGCATGGTGAGGTCATTGCTGAGAGTAAGAAGCCAGACTTAGAGCCTTATATTGGTTTGCATTATCCTGCTTTTGATATTCCTCAGGATTTGAAGTTGTTGTTCAAGCGAAATCGAATTAGCATGATTGTGAATTGCCATGAAACTCCTGTTCATGTGATTCAAGATGAAGGTCTCAAGCAGCCTTTATGCTTGACTGAATCAGCCCTTCTTGCCCCACATGAGTGTCATGCTAAGTACATGGCCAATATGAGATCAACTGCTTCATTGGTTATGGCAATAGTAATAAATGAGAATAATGATGTTGTTCCTAATTTTACTTCAATAATGAAGCTATGGGGCCTAGTAGTTTGCCTTCACACTTCGGCTCGATTCGTTCCTTTCCCTTTCCGCTGTACATACGAATTCCTAATTCAGGCCTTTGAGCTCAAACTGAATGTGGAACTTCAATTGGAATCAGTATTATTGGAGAAACAAGTTCTGAGGACTCAGACTGTTTTGTATGATATGCTGCTTAGGGACTCTCCAATTGGTATTGTTACTCAATCCCCAAGTATTATGGACCTTATGAAGTGTGATGGAGCAGCTCTTTACTACCATGGAAACTACTATCCCTTAGGCGTCACTCCGAATGAGTCCCAGGTAAAGGACATTATAGAGTGGTTGATGACCTTCCACGGAGATTCAACAGGCTTAAGTACTGATAGTCTGGCTGATGCAGGTTATCCAGGAGCTGGGTCTCTTGGTGATTCAGTTTGTGGAATGACTGTGGCTTATATCACAGAAAAAGATTTTCTATTCTGGTTCAGATCCCGTGAGGCAAAAGAGATCGACCGGGATGGTGAAAAGGATTTGGAAATTAATGCAATTCACTCTTTGCAGCTTATACTACAAGAATCAATAATGAAGGATGTTGAGCATAGAAATTCTAAGCCTGTTGTAGATTTTAAGTCTACAGGTGTAGATGATCTAATTTGGATGGCCAAAGAAATGGTTAGATTGATAGAAACTGCTATTGCTCCCATATTTTCTGTAGATGTCGATGGACAAATAAGCGGGTGGAATGCTAAGGTTGTGGAATTGACTGGACTCTCAGTTGAGGAAGCTGTGGGAAAGTCATTGGCTCATGATCTTGTGCATAAGGAGTCTGAAGAGGCTGTAGATAGGCTTGTTTCTCGTGCTTTAAGAGGGGAAGAAGATAAGAATGTTGAGATAAAACTGAGGACCTTTAGCCCACAAAACTATAATATGGCAGTTTTTGTAATGGTGAATGCTTGCTCCAGCAAGGATCATATGAATGGAATCAGTGGAGTATGCTTTATTGGTCAGGATGTTACAGATCAAAAAGTGGTAATGGACAAATTTATTCACTTACAAGCTGACTACAAGGCCATCGTACATACCCCGAGTCCATTAGTCCCTCCCATTTTCGCGTCGGATGCTAACAGATGCTGTTCTGAGTGGAACACTGCCATGGAAAAGCTTACCGGTTGGGTTCGTGGTGATGTCATTGGGAAATTGTTGGTGGGAGAGGTTTTTGGTAATTGCTGTCAACTGAAGGGTTTGAATGCTCAAGCCAAGTTCTTGATTGTCTTGAACAATGTACATGGCGGAAAAAGTACAGAAAAATTCCCACTTTCATTCGTTGATCGGTATGGAAACTTTGTGCAAGCCCTTTTAACTGCACATAAGAGAGTTGACTCAGATAGTGAGATTATTGGGGCTTTATGTATTTTGCATACTGCAAGTTCTGAACTTCAACAGGCTCTGGATGTAAAGAGGAAAATGGAGAAGAATTGCCTTGCTGCTGTCAAAGAATTAGCTTACATTCGTCAAGAAATAAAAAATCCTTTGAGGGGAATACGATTTAGTAACTTTCTTTTGAAGGGTACTGAATTGACTGAAGATCAAAATCAGTTTCTTGAGGCTGGTGATGCTTGTGAGAAGCAGATGGTCAGGATAATACATGATGTTGGCATCGAGCGCATCGAGGACGGGTCCTTGGAGCTTGAGGAGGAGGAATTCCTACTTGGGGATGCTGTAAATGCAGTGGTTAGCCAAGTGATATTATCACTGAGAGAGAGACATTTACAGCTGATTTGTGATATTCCTAAAAGAATCAAGACACTTACAGTTTATGGTGATCAATTGAGGATTCAACAGGTTTTGGCTGATTTCTTATTGATCATGGCCCGTTATGCTCTATCTCCAGATGGTTGGGTAGAAATTGATGTTGATCCTACATTCAAACAAATTTCTGATGATCTTACTCTTCTGCATGCTACATTCAGGATGATATGTCCTGGTGAAGGTCTTCCTTCTGAACTGATTCAAGAAATGTTCCATGGAAGTGAGTGGAGAAGTGAAGAAGGGTTAGGGCTTAGCGTGAGCAGGAAGATCTTGAAGTTCATGGATGGTGAGGTCCAATATATCAGGGAAGCTGAAAAATGCTTCTTCTTGATTGTTCTTCAACTACCCTTAATTCGAGCCGGGGATCAATTCGGTTTAGCTGCCAAAGGTGCCGAAGAAGGTGCCAGTGCCGGCGTTGTCGGAGCAGCTGCTCAAGGTGTTGGCTCCGGCATTGGCAAAAGCTACAGTGGCGGCAGCTCTACCGAATTCTACAAATCCTTACTCACAAACTTATGA 3336 0.4221 MASSASRALKSLPKHHTSSASNRRTHHGTPSITKPFACCSHSTKTFSNSLLYQSEIQRSSYIQTFGFVLVIDEPTFLAIGYSENARDFLGLDAPQSVPNLENSETLEIGSDVRNFFTPFSVLQLEKAFEAQELSRLNPIWVRSKNSGKHFYAILHRIDVGVVIDFEPARTEDPELSISRTMQSQKLAGRAISRFKSFPGRDINHHCDILVQSVRELTGYDRVMVYKFHEHGHGEVIAESKKPDLEPYIGLHYPAFDIPQDLKLLFKRNRISMIVNCHETPVHVIQDEGLKQPLCLTESALLAPHECHAKYMANMRSTASLVMAIVINENNDVVPNFTSIMKLWGLVVCLHTSARFVPFPFRCTYEFLIQAFELKLNVELQLESVLLEKQVLRTQTVLYDMLLRDSPIGIVTQSPSIMDLMKCDGAALYYHGNYYPLGVTPNESQVKDIIEWLMTFHGDSTGLSTDSLADAGYPGAGSLGDSVCGMTVAYITEKDFLFWFRSREAKEIDRDGEKDLEINAIHSLQLILQESIMKDVEHRNSKPVVDFKSTGVDDLIWMAKEMVRLIETAIAPIFSVDVDGQISGWNAKVVELTGLSVEEAVGKSLAHDLVHKESEEAVDRLVSRALRGEEDKNVEIKLRTFSPQNYNMAVFVMVNACSSKDHMNGISGVCFIGQDVTDQKVVMDKFIHLQADYKAIVHTPSPLVPPIFASDANRCCSEWNTAMEKLTGWVRGDVIGKLLVGEVFGNCCQLKGLNAQAKFLIVLNNVHGGKSTEKFPLSFVDRYGNFVQALLTAHKRVDSDSEIIGALCILHTASSELQQALDVKRKMEKNCLAAVKELAYIRQEIKNPLRGIRFSNFLLKGTELTEDQNQFLEAGDACEKQMVRIIHDVGIERIEDGSLELEEEEFLLGDAVNAVVSQVILSLRERHLQLICDIPKRIKTLTVYGDQLRIQQVLADFLLIMARYALSPDGWVEIDVDPTFKQISDDLTLLHATFRMICPGEGLPSELIQEMFHGSEWRSEEGLGLSVSRKILKFMDGEVQYIREAEKCFFLIVLQLPLIRAGDQFGLAAKGAEEGASAGVVGAAAQGVGSGIGKSYSGGSSTEFYKSLLTNL 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1086 1111 TIGRFAM sensory_box: PAS domain S-box protein 564 679 IPR000014 -
Lele18g1086 1111 FunFam Phytochrome 553 685 - -
Lele18g1086 1111 SMART HKATPase_4 944 1059 IPR003594 -
Lele18g1086 1111 SUPERFAMILY PYP-like sensor domain (PAS domain) 566 678 IPR035965 -
Lele18g1086 1111 Pfam His Kinase A (phospho-acceptor) domain 837 895 IPR003661 GO:0000155|GO:0007165
Lele18g1086 1111 Pfam PAS fold 691 810 IPR013767 GO:0006355
Lele18g1086 1111 Pfam PAS fold 560 675 IPR013767 GO:0006355
Lele18g1086 1111 SMART HisKA_10 832 896 IPR003661 GO:0000155|GO:0007165
Lele18g1086 1111 Gene3D - 54 515 IPR029016 -
Lele18g1086 1111 Pfam GAF domain 205 379 IPR003018 GO:0005515
Lele18g1086 1111 Gene3D - 384 503 IPR043150 -
Lele18g1086 1111 MobiDBLite consensus disorder prediction 1 29 - -
Lele18g1086 1111 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 201 369 IPR016132 -
Lele18g1086 1111 SUPERFAMILY GAF domain-like 181 374 - -
Lele18g1086 1111 CDD PAS 702 810 IPR000014 -
Lele18g1086 1111 Gene3D PAS domain 704 817 - -
Lele18g1086 1111 Pfam PAS fold 52 168 IPR013654 GO:0006355
Lele18g1086 1111 PRINTS Phytochrome signature 116 138 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 PRINTS Phytochrome signature 560 576 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 PRINTS Phytochrome signature 579 594 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 PRINTS Phytochrome signature 673 693 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 PRINTS Phytochrome signature 301 322 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 PRINTS Phytochrome signature 653 670 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 PRINTS Phytochrome signature 216 235 IPR001294 GO:0006355|GO:0009584
Lele18g1086 1111 SUPERFAMILY GAF domain-like 387 532 - -
Lele18g1086 1111 Gene3D PAS domain 556 679 - -
Lele18g1086 1111 Coils Coil 809 829 - -
Lele18g1086 1111 CDD HATPase_Phy-like 943 1055 IPR044767 -
Lele18g1086 1111 SUPERFAMILY PYP-like sensor domain (PAS domain) 705 808 IPR035965 -
Lele18g1086 1111 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 897 1054 IPR036890 -
Lele18g1086 1111 CDD HisKA 837 888 IPR003661 GO:0000155|GO:0007165
Lele18g1086 1111 Gene3D - 878 1049 IPR036890 -
Lele18g1086 1111 Gene3D PAS domain 55 304 - -
Lele18g1086 1111 ProSiteProfiles Histidine kinase domain profile. 839 1059 IPR005467 -
Lele18g1086 1111 ProSiteProfiles PAS repeat profile. 557 628 IPR000014 -
Lele18g1086 1111 ProSiteProfiles PAS repeat profile. 691 743 IPR000014 -
Lele18g1086 1111 Pfam Phytochrome region 392 516 IPR013515 GO:0006355|GO:0009584
Lele18g1086 1111 CDD PAS 568 639 IPR000014 -
Lele18g1086 1111 MobiDBLite consensus disorder prediction 1 16 - -
Lele18g1086 1111 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 944 1054 IPR003594 -
Lele18g1086 1111 PANTHER OS08G0260000 PROTEIN 51 894 - -
Lele18g1086 1111 SMART pas_2 690 761 IPR000014 -
Lele18g1086 1111 SMART pas_2 559 626 IPR000014 -
Lele18g1086 1111 FunFam Phytochrome 384 524 - -
Lele18g1086 1111 SUPERFAMILY PYP-like sensor domain (PAS domain) 53 171 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1086 Lele-ChrLele18 7445597 7450591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1086 52 1057 Histidine Kinase Gene Family AT4G16250 58.215 0.0 1234