Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1059 ATGAGGGCGAATCGGACGGTTGTGTGTGTTTCCGCAAACCCAAAGGCTCATCACAGAGACAAGAGAGAGAGAGAGAAGTGTGAAAGCTTCTGCGATTTGAGTCCAGCTGATGTTGGTTATGGGTGTCTGGGAATTTTAGTATTAAGGTCTCAGATTGTTTTGTTGTTTTCATTGTGTGTCTTAGTTTTTGATGATGTGTTCTTTTTTGTAGAACTTGATTGGAGGTTTCAAGAACTAAAAGGCTGTAACACTGTATTCTTTGTACACAACACATGCTTAATGAAGCCATTTCTGTCATTGAATCATACTGATACTGACGTCAATTGTCCACACCTTGATTCTAATCACTCAATGGCTCGAGTTCCTTATCCATATGGTGATCCTTTTTATGGTAGCTCTGTAGCATCTTATGGATCACAGGCTATTAATCAACCCCAAATGGTTCCCCAAATGCTGGGGCTTGCATCTACAAGAGTTGCATTGCCACTCGATCTCGCAGAAGATGGACCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGAGCAAAGCTCGATGCTCAAAACAAACTTATCAAAAGCCGTAAGCCATATCTTCATGAGTCTCGGCATCGCCATGCTTTGAACAGGGTTAGGGGATCTGGAGGACGCTTTCTCAGCACCAGACAGCTTCAACAGTCCAATGCACAAGTTATGACTAGTGCCAATTCTGGTTCAGACTCTGTAAACAACTTGTATCAAAAGAAAGATGCATCTTCGGAGGTGGAAATTCATCCCTCATGGACTGGCACTGGTGAAAAGGCATCTTCTATCTCGACCTGCTCCGACATGACAAGTGGGTCCAGAAACAATGTCAACTTTAGGCAGCAGCCAGAGTGCAAGTTCTTGGGGAACTCTCCAAACATGGGCAGTGCATCACAGTGCAGCGGTGGACTTACCTTCAGTGGTGGGACCCAGCAACGTGCACCAATCGTCCGGTGA 999 0.4474 MRANRTVVCVSANPKAHHRDKREREKCESFCDLSPADVGYGCLGILVLRSQIVLLFSLCVLVFDDVFFFVELDWRFQELKGCNTVFFVHNTCLMKPFLSLNHTDTDVNCPHLDSNHSMARVPYPYGDPFYGSSVASYGSQAINQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLDAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNAQVMTSANSGSDSVNNLYQKKDASSEVEIHPSWTGTGEKASSISTCSDMTSGSRNNVNFRQQPECKFLGNSPNMGSASQCSGGLTFSGGTQQRAPIVR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1059 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 224 IPR001289 GO:0003700|GO:0006355
Lele18g1059 332 MobiDBLite consensus disorder prediction 312 326 - -
Lele18g1059 332 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Lele18g1059 332 MobiDBLite consensus disorder prediction 312 332 - -
Lele18g1059 332 MobiDBLite consensus disorder prediction 263 287 - -
Lele18g1059 332 MobiDBLite consensus disorder prediction 259 287 - -
Lele18g1059 332 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Lele18g1059 332 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Lele18g1059 332 Gene3D - 167 229 - -
Lele18g1059 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 105 285 IPR001289 GO:0003700|GO:0006355
Lele18g1059 332 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1059 Lele-ChrLele18 7170860 7175741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1059 112 233 CCAAT-HAP2 Transcription Factor Family AT1G17590 58.065 2.99e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele18g1059 CBFB_NFYA 6.5e-27 No_clan