Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1052 ATGAGAAGCCTCTCCCTCACCTCTAACCTCCATTGCTGTCAACCTTTTTCAGGTGGGATGCATTTCATAGGTGAGGAGTATGCGACCTCCATTGCTGGTGAAGGCTCTGGAGGTGACGGCGACGGAAGCAACACAGGGATGGTTTGGTTTCAATGCGAGGATTGTGGTGACAATCTGAAGAAACCCAAGTTACCGAATCATTTCAGAACTTGTTCTGCTTCTAAGTTATCTTGCATTGATTGTGGACAAATATTTGGGCAAGACACCGTTCAGCAGCACACACAATGTATGACAGAAATGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACGTCGAATGTTACAACTTCCAAACCTAACAATAATAACAAGCAAAAGCCTGAAGTTGATATTCATGTTGGGTTATCAGAAAGGCCTCCGTGGTTTTGTAGCCTTTGCAACACAAAAGCTACGAGTAAGCAAACACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCAAAAGCTCGGGCATTCCATGCTGCAAATCAACAACCAGTTCAGACTGACACACGTGCTTCAGATGCAAAGCTTCCAGTGGAGCATGCTTCTAATGATAAGGTCCAAGTCAACAATAACGTAGAGCAGACAAAATTGCAAGAATCATCTGAACACAATAACTTGAAATCAGGGAATGAAATCTCTCCATCAAATAAAAAGAGGAAATCTGATGTGGTGGAGGATAAACCTAGCAGGAAAAAGGGCAGGGATGACAGTCCAGGTGAGTTGGGAAATGGGGAAGTAGTTCAGGCTGAAGGAGCAGAAGCTGGGGAAAAAGATCATTTGAAGAAAGACAAAATGGTTAACGACATGAAGAATATAAAGTGGAAGAAGTTTATCAAATCCGCATTGAAATCTCAGCCTGATGGAAAATTGAAGATGAAGAAGTTGAGAAAACATGTCTTGAAAGCCGTGCTGGAATCTGGCGTTGAAGTGGATGAAACTGAACTTAGTAAGGCACTTGAGCATAAGATCAATTCAAGTTCCAGATTTGCAGTAGAGAAGAAAAATGTGCGTTTGGTGGCTAAGGATGGTGAGGAATAG 1083 0.4266 MRSLSLTSNLHCCQPFSGGMHFIGEEYATSIAGEGSGGDGDGSNTGMVWFQCEDCGDNLKKPKLPNHFRTCSASKLSCIDCGQIFGQDTVQQHTQCMTEMEKYGPKGQGKTSNVTTSKPNNNNKQKPEVDIHVGLSERPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHAANQQPVQTDTRASDAKLPVEHASNDKVQVNNNVEQTKLQESSEHNNLKSGNEISPSNKKRKSDVVEDKPSRKKGRDDSPGELGNGEVVQAEGAEAGEKDHLKKDKMVNDMKNIKWKKFIKSALKSQPDGKLKMKKLRKHVLKAVLESGVEVDETELSKALEHKINSSSRFAVEKKNVRLVAKDGEE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1052 360 SUPERFAMILY beta-beta-alpha zinc fingers 76 104 IPR036236 -
Lele18g1052 360 SUPERFAMILY beta-beta-alpha zinc fingers 43 72 IPR036236 -
Lele18g1052 360 SMART ZnF_U1_5 138 172 IPR003604 GO:0003676|GO:0008270
Lele18g1052 360 MobiDBLite consensus disorder prediction 228 254 - -
Lele18g1052 360 MobiDBLite consensus disorder prediction 108 127 - -
Lele18g1052 360 MobiDBLite consensus disorder prediction 102 127 - -
Lele18g1052 360 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 47 354 IPR039999 GO:0003677
Lele18g1052 360 MobiDBLite consensus disorder prediction 211 227 - -
Lele18g1052 360 FunFam UBP1-associated proteins 1C 135 178 - -
Lele18g1052 360 Coils Coil 193 213 - -
Lele18g1052 360 Gene3D Classic Zinc Finger 135 177 - -
Lele18g1052 360 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 47 72 - -
Lele18g1052 360 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 73 97 - -
Lele18g1052 360 FunFam cell growth-regulating nucleolar protein-like 47 96 - -
Lele18g1052 360 Pfam LYAR-type C2HC zinc finger 76 103 IPR014898 -
Lele18g1052 360 Gene3D - 47 96 - -
Lele18g1052 360 SUPERFAMILY beta-beta-alpha zinc fingers 130 176 IPR036236 -
Lele18g1052 360 MobiDBLite consensus disorder prediction 211 277 - -
Lele18g1052 360 Pfam Zinc-finger of C2H2 type 141 165 - -
Lele18g1052 360 MobiDBLite consensus disorder prediction 168 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1052 Lele-ChrLele18 7101076 7104475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1052 47 207 C2H2 Transcription Factor Family AT2G19380 39.091 1.17e-40 149