Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1049 ATGGGGGAAGAAGCCATCATGGATGCCACTGAAGTGATCATGCACAAAAATGGAATTATCAATGATCAAAGTCTTGAATTTGACATATACCCTTTGAATGGCTACTACTTTGACTCCAAAAATGCCATTCCCTTCAAGGATGAGACCTTGGTTGATCGTCTTCAGAGGATGAAGTCTAACTATGCTGCTCATGGGATACGAAATTGTGTGGAAGCTGTCATGCTGGTTCGTTCTCTACTGTTTCTGTCTTGCAGATTTGTTTTGAAAAATTCAGAATATGATTCTGAACTGAAGAATGTAAATATTCTTGGATCAGGTTTGGTTGTTCAAACATCCACATATGTTGATGCTTCAACTTTTGCTGAAGTCGAATTAAAGCGTAAGCTGGCAATGAAGCTTAATGTTGGTGAACATGGGGATGGGGCTGAATGGGAGGTCAGCGAATGCCTTGGAATGTGGTGGAGACCTGATTTTGAAGCTTTACTGTATCCCTACTTGCCACCTAATGTGAAGAGTCCAAAGGAGTGTACGAAACTCTACCTGGTGAAGCTACCAGAGTCACGAAAGTTCATCGTGCCTAAGAATCACAAGCTACTTGCTGTCCCATTGTGCCAAATTCATGAAAATCACAAGCTAGGCCCAAATCTCAAGCTCACTGTTCCTTTTTCTGATCAAGTTTCTTTCGCCAAGTTCCTGACTGAAAGCGGAACCTTCAAGGAGGGGGATCTTCTGGTGAACAAGTATGGCGTTCGAATTATCTCTCAGAATGAAGTTGAAGCTCCACCCCCTATCAGGCCACTAGACAACCAATTAAGTTTAGCAGACATAGACGCAATCAAAGTGGTTGGGAAGGGAAACGGCGGAATAGTAATTCAAATGAATATCGACGAGTCTATGTGCAAGCAGATTGCACAGGAGCTGAAAATTAATCAGTCAGCTCAATGTCCCTATGTTGTTGTCTGTTACCAGTCCTTTTATGAAAATGGCATTATATCAATCGTCTTAGAGTACATGGACGGAGGGTCTCTGGAAGACTTTTTGAAGAAAGTGAAATCAATTCCAGAAGCATATCTTGCTGCCATTTGCAAGCAGGTGCTGAAGGGTTTAACATATCTTCACCATGAAAAACATATTATTCATAGGGACTTAAAACCTTCCAATTTGTTGATAAATCACAGAGGGGAAGTAAAGATCACTGATTTTGGTGTCAGTGCAATCATGGAAAGTACATCTGGTCAAGCCAACACTTTCATTGGAACACGTATCTATATGTCTCCTGAGAGAATCAATGGATTCCAGCGTGGCTACAACTACAAATGTGACATATGGAGTTTGGGACTAATATTGCTGGAGTGTGCTACGGGTAGGTTTCCATATACACCGCCCGATCAAGGAGAAAGATGGGAAAATGTTTTTCAGCTTATTGAAGCTGTTGTTGAAACTCCTCCTCCCTCTGCTCCACCTGATCAATTTTCTCCAGAGTTGTGCTCATTTATATCAGCATGTTTGCAGAAAAATCCAAAGGATAGAATGTCAGCCCAAGAACTTATGAGACATCCATTTGTCAATATGTATGAGGACTTGGATGTGGATCTTTCAGCTTACTTCTCCAACGCAGGATCCCCCTTGCTACTTTATAAAACTTACTAG 1650 0.4152 MGEEAIMDATEVIMHKNGIINDQSLEFDIYPLNGYYFDSKNAIPFKDETLVDRLQRMKSNYAAHGIRNCVEAVMLVRSLLFLSCRFVLKNSEYDSELKNVNILGSGLVVQTSTYVDASTFAEVELKRKLAMKLNVGEHGDGAEWEVSECLGMWWRPDFEALLYPYLPPNVKSPKECTKLYLVKLPESRKFIVPKNHKLLAVPLCQIHENHKLGPNLKLTVPFSDQVSFAKFLTESGTFKEGDLLVNKYGVRIISQNEVEAPPPIRPLDNQLSLADIDAIKVVGKGNGGIVIQMNIDESMCKQIAQELKINQSAQCPYVVVCYQSFYENGIISIVLEYMDGGSLEDFLKKVKSIPEAYLAAICKQVLKGLTYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMESTSGQANTFIGTRIYMSPERINGFQRGYNYKCDIWSLGLILLECATGRFPYTPPDQGERWENVFQLIEAVVETPPPSAPPDQFSPELCSFISACLQKNPKDRMSAQELMRHPFVNMYEDLDVDLSAYFSNAGSPLLLYKTY 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1049 549 Pfam Nucleotide hydrolase 27 213 IPR016706 GO:0003729|GO:0005849|GO:0006378
Lele18g1049 549 SMART serkin_6 276 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g1049 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Lele18g1049 549 Gene3D Phosphorylase Kinase; domain 1 290 339 - -
Lele18g1049 549 FunFam Mitogen-activated protein kinase kinase 6 341 541 - -
Lele18g1049 549 CDD PKc_MAPKK_plant_like 274 526 - -
Lele18g1049 549 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 223 526 - -
Lele18g1049 549 Pfam Protein kinase domain 293 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g1049 549 ProSiteProfiles Protein kinase domain profile. 229 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g1049 549 SUPERFAMILY Protein kinase-like (PK-like) 278 528 IPR011009 -
Lele18g1049 549 Gene3D Transferase(Phosphotransferase) domain 1 340 541 - -
Lele18g1049 549 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 26 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1049 Lele-ChrLele18 7077590 7087908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1049 222 541 MAP Kinase Kinase Gene Family AT4G26070 61.905 4.15e-152 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lele18g1049 Pkinase 1.3e-61 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g1049 18 7077590 7087908 Lele19g1082 19 7011820 7014603 hybridization
Lele18g1049 18 7077590 7087908 Lele20g0369 20 11468184 11471636 hybridization