Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1032 ATGTTTTGCTATCAGAGATTGTTGTGGTTGGTGCTGCTTATGAATCTGGGGAATGCTCAGAACCAGTGTGCCCATGATGATCAAAGTGTTCCGTTCTGTCTCGTAAAGGACAAACTTGATAGTAGCAATCCCTGTGCTGATTCCTTCACTACAACTGACAATGTCGAGATGGATGAGTTCCCGGGAGTAGAGCCTCTTCAAGGAGTTAGACTCGCCGAGGTATCAAAAGACTACAAGTCCCGCATCTTACAATTATGGGATGTTGGAGGTTGTCTTCCTAAACTCTATCTACGACTTCATAATTCATCCATTTATCCTTTCCAATTTGAATCATATGGTCTGGCATCATCCAACAGAACTTTCCGTGTTACCTTTTTCGATTGTTCATCGATTGAGTCCAAACAAGATATGCATGTTTGCCCGATTTATGTTGTTGGCCCCACCGATGGCATCCTGAAGACAGGCGTAGCCTTTTGCACCAAGATGTTGCAGTTAGATTCGCCATTAGAACCATATGAATTTCGGTCGGAAACATTTCAACTTAGATGGTCCCAGCCCAAATGTGGTGCTGAAAACAGCAAGCCAATATTGTTCAAATTTGTTTTACCAGCTTCAGTCATGGCGGGAACAGCACCTGAGGGTTCACAGTTTGATGCTCGTCAATTTGATGCCAAGATGAGTGAATTACTTACAGCTGATGGGCAGGATTTCTTTGCATCTTATGATGAGGTCTATGATAGTTTTGATGCTATGGGCTTGCAGGAGAATCTTCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCGTCAGCCATTCAGCAAAGGGGAATTGTTCCCTTCTGTAAGGGACTTGATGTGATCCAACAAGCTCAATCTGGAACTGGGAAGACAGCAACTTTTTGCTCTGGAATTTTGCAGCAACTTGACTATGGTTTGATGGAATGCCAGGCATTGGTCCTAGCACCAACTCGAGAGCTTGCACAGCAAATTGAGAAGGTTATGCGAGCACTGGGAGATTATCTTGGCGTAAAGGTGCATGCATGTGTTGGAGGAACCAGTGTCCGTGAAGACCAACGCATTCTCTCTAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGCAGGCAGTCTCTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAGATGCTCTCCAGAGGTTTCAAAGACCAGATTTACGATATATTCCAGTTGCTGCCAAGTAAAATTCAAGTGGGAGTTTTCTCTGCCACGATGCCTCCTGAGGCCCTGGAGATCACAAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTAGACAAAGAAGAATGGAAGCTGGACACTCTATGTGATCTTTATGAAACATTAGCTATCACTCAGAGTGTCATTTTTGTCAACACCCGAAGGAAGGTTGATTGGCTTACGGACAAGATGCGAAGCCGGGATCACACAGTGTCAGCAACCCATGGAGATATGGACCAAAATACCAGAGACATTATCATGCGTGAATTCCGTTCTGGTTCTTCTCGTGTTCTGATCACAACAGATCTCTTGGCACGTGGTATTGACGTCCAGCAAGTGTCTCTAGTTATTAACTATGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGTAGGTTTGGGAGAAAAGGTGTTGCCATCAACTTCGTGACAAAGGATGATGAAAGAATGCTGTTTGACATCCAGAGGTTTTATAATGTGGTAGTAGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1860 0.4419 MFCYQRLLWLVLLMNLGNAQNQCAHDDQSVPFCLVKDKLDSSNPCADSFTTTDNVEMDEFPGVEPLQGVRLAEVSKDYKSRILQLWDVGGCLPKLYLRLHNSSIYPFQFESYGLASSNRTFRVTFFDCSSIESKQDMHVCPIYVVGPTDGILKTGVAFCTKMLQLDSPLEPYEFRSETFQLRWSQPKCGAENSKPILFKFVLPASVMAGTAPEGSQFDARQFDAKMSELLTADGQDFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVVEELPSNVAELL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1032 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 447 IPR014001 -
Lele18g1032 619 FunFam Eukaryotic initiation factor 4A-II 234 453 - -
Lele18g1032 619 CDD DEADc_EIF4A 250 448 - -
Lele18g1032 619 Pfam Helicase conserved C-terminal domain 472 580 IPR001650 -
Lele18g1032 619 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 393 401 IPR000629 -
Lele18g1032 619 Gene3D - 455 619 IPR027417 -
Lele18g1032 619 Pfam DEAD/DEAH box helicase 271 432 IPR011545 GO:0003676|GO:0005524
Lele18g1032 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 246 274 IPR014014 GO:0003724
Lele18g1032 619 SMART ultradead3 265 462 IPR014001 -
Lele18g1032 619 PANTHER RNA HELICASE 227 603 - -
Lele18g1032 619 Gene3D - 237 454 IPR027417 -
Lele18g1032 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 600 IPR027417 -
Lele18g1032 619 SMART helicmild6 499 580 IPR001650 -
Lele18g1032 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 619 IPR001650 -
Lele18g1032 619 CDD SF2_C_DEAD 459 589 - -
Lele18g1032 619 FunFam Eukaryotic initiation factor 4A-III 454 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1032 Lele-ChrLele18 6906445 6915433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1032 207 619 Eukaryotic Initiation Factors Gene Family AT1G72730 89.130 0.0 764