Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1025 ATGATGGATTCTCGAATTACCATTTCTGATTCCAACGATATCAGCAATAATCATGGAAGCGGAGTTTTACGTATAGCCAGCAGTTCCCAAACTCGTTTTACTTCTCCGGAAGCTTCACCTCCTTCAGATGTTACAGCCCTAAGGCGCCTCTCCGACAACCTCGCATCAATCTTCGAAGCTTCGGATTCTGATGGCTTCTTTGCTGACTCCAGAATCGTTCTCGGCGACGGTCGGGAAGTTCCGATTCACCGCTGCATTCTGGTGGCGAGAAGCCCTTTCTTCAAGAGCGTGTTCTCTGGGAAGGAGAGGAATGGGGTCAAATTGGAATTGAAGGAATTGGCTAAGGATTACGAGGTTGGTTTCGATGCGATTGTGGGTGTTGTGAGCTATTTGTATATTGGGAAAGTAAGGTCGTCGCCCAAAGGTGTTTGTGTGTGTGTGGACGATGATTGCTCCCATCTTGGCTGTCGACCTGCTGTAGAATTCATGGCTCGACTTCTCTATGCTTCTTCCACGTTTGAAATATCTGAGTTGGTTCATCTTTATCAGAGGCATCTGCTACAAATTATTCACAAGGTAGCAGCAGATGAAATTTTGCCGGTTCTTTCTGTAGCAAATATATGTGGTAAATCCTGTGAGAATCTGCTTGCAAGGTGTACTGAGTTGATTGTTAAATCTGATGTTGATGTAATTACCCTTGAAAAAGCTCTGCCACAGCACATTGTGAAACAAATTATTGATAAACGTATAGAATTAGGCTCGGACAAGCCCAAGAACATCTGTTTGCCAGATAAATATGTGAAGAGAATACATAGGGCTCTTGATTCTGATGATGTTGAGTTGGTCAGGTTGCTCTTGAGAGAGGGACATACTAATCTAGATGATGCTTATGCCCTTCATTATGCTGTTGCATACTGTGATGCCAAGACCACAACTGAGCTTCTTGATCTCGGGCTCGCCGATGTTAATTGTAAAAGTCCCAGGGGATATAATGTGCTGCATGTGGCTGCCATGAGGAAGGAGCCTAAGATTATAGTGTCCCTTTTGACAAAGGGAGCCCAGCCTTCTGATCTCACTTTCGATGGTAGGAAAGCCCTTCAAATTTCGAAGCGCCTCACGAATTGCGATGGATTATTATAA 1140 0.4439 MMDSRITISDSNDISNNHGSGVLRIASSSQTRFTSPEASPPSDVTALRRLSDNLASIFEASDSDGFFADSRIVLGDGREVPIHRCILVARSPFFKSVFSGKERNGVKLELKELAKDYEVGFDAIVGVVSYLYIGKVRSSPKGVCVCVDDDCSHLGCRPAVEFMARLLYASSTFEISELVHLYQRHLLQIIHKVAADEILPVLSVANICGKSCENLLARCTELIVKSDVDVITLEKALPQHIVKQIIDKRIELGSDKPKNICLPDKYVKRIHRALDSDDVELVRLLLREGHTNLDDAYALHYAVAYCDAKTTTELLDLGLADVNCKSPRGYNVLHVAAMRKEPKIIVSLLTKGAQPSDLTFDGRKALQISKRLTNCDGLL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1025 379 PANTHER REGULATORY PROTEIN NPR3 7 374 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele18g1025 379 Pfam BTB/POZ domain 63 188 IPR000210 GO:0005515
Lele18g1025 379 Gene3D Potassium Channel Kv1.1; Chain A 42 225 IPR011333 -
Lele18g1025 379 CDD BTB_POZ_NPR_plant 48 190 - -
Lele18g1025 379 SUPERFAMILY POZ domain 49 189 IPR011333 -
Lele18g1025 379 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 239 378 - -
Lele18g1025 379 Pfam Domain of unknown function (DUF3420) 227 271 IPR024228 -
Lele18g1025 379 ProSiteProfiles BTB domain profile. 68 140 IPR000210 GO:0005515
Lele18g1025 379 Gene3D - 239 376 IPR036770 -
Lele18g1025 379 SUPERFAMILY Ankyrin repeat 268 372 IPR036770 -
Lele18g1025 379 SMART ANK_2a 328 357 IPR002110 GO:0005515
Lele18g1025 379 SMART ANK_2a 265 293 IPR002110 GO:0005515
Lele18g1025 379 SMART ANK_2a 294 324 IPR002110 GO:0005515
Lele18g1025 379 SMART BTB_4 68 190 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1025 Lele-ChrLele18 6847530 6848791 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele18g1025 BTB 4.8e-10 CL0033