Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1024 ATGGTGGTTGCTCACGGTGGATCCGGTGGAATCGGCCATGGTGGAAGGTCAGAATCCATTTCTACAGTTCTATTGAACGAAGCTATGGCTGGAGTAGCACGAGTCAAATCAGAGCAAGAAATGGTGTCCGATGAGGACACCGGTCGTTCGAGTTCTGGTGGTTACTGCGATGTTGAAGGTGAACCACACGACGGCGTTTCCAGTGAGGATTCGGGAAGGAAGAGCTCTCAAGTGACAGATGAGGAGTTTAAACCGGTTCACGTCAAGCTTGAGGAACCGGGTGGAGCGGTGGATGATGATGGCGGTGCTGGAGCTAATGGGTCGTGTTATTCATCGCCAATCTTCTTACCGAAACCGATGGAAGGGCTGCACGAGGTGGGCCCGCCCCCTTTTCTGAAGAAGACCTTCGAGATGGTTGAGGACCCGGTGACCGACCCAATTGTGTCCTGGAGCGAAGCTCGTGATAGCTTCATCGTTTGGGATTCCCACGAATTTTCCAAAATTCTTCTCCCTAAGTACTTCAAACACAGCAATTTCTCGAGCTTCATTCGGCAGCTTAATACATACGGATTTCGGAAGATTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTTCAGGGTGGAAAGAAGCATTTGCTGAAGAACATTAGGAGAAGAAGCAAGTATAACAAACTGCATCAAGGAGGAGCATTGACTTCCATGAAACCTGGCCTGGAGGCTGAAGTTGAGAAACTGAAGAAGGATCAGAACATACTGAAAGTGGAAATTCTGAAGTTGAAACAGCAACAAGAGACTTCACAGGTTCAGCTTGTAAATGTTCAAGAACGCGTTCGGTCTGCTGAGTTGAAGCAGTGCCAGATGATGTATTTCCTGACCAAAATGGCCAGAAGACCAACTTTGGTTCAGCAGTTAATCCAGAAGGTAAAGCGAAAAAGAGAGCTCAGTGGAGGTGAGATCAGTAAGAGACCCAGATTGCTTGGAACCCCTTGCCCTATGAACTTCCCCAAGGCCACGGGCACCAGGCCTGATGTTGATTATAAACAAGATAATAAGGACTTGGCTTCATTGCAATCAGAGCTCAATGGACTCTTGTCTGAAACAGTGAGCAATAGCAGAATACAGCCTGCAGCTCCTTCTCCTCTGAAAGATGAACTATGCAGTCCGGGATTAAGAACCAATTCTTCAAGAGCAAGTGCTAATGATGTATCTTCCGCGGCCTGCTGTATGATGTCAGAAAAACTGATGGCAGAGAACTCTGTTGTTGATGAAGGGCTTGATGTGAATGATTCAAATATCTATCTTGAATTGGAGGATTTGATTAGCAAACCAACTGACTGGGTTGGATCTTCTGCAAGTGGATTGGTGGGGCAAACTGGTTGCTGCAAGACTGCGTCTACACTTCACACAGATGATGCTGCTGCAACAGCAATGATGATGAGCAAATTGTATTTAGGCTCTGCAACATACCAACTTGAAAAGTGA 1485 0.468 MVVAHGGSGGIGHGGRSESISTVLLNEAMAGVARVKSEQEMVSDEDTGRSSSGGYCDVEGEPHDGVSSEDSGRKSSQVTDEEFKPVHVKLEEPGGAVDDDGGAGANGSCYSSPIFLPKPMEGLHEVGPPPFLKKTFEMVEDPVTDPIVSWSEARDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGGALTSMKPGLEAEVEKLKKDQNILKVEILKLKQQQETSQVQLVNVQERVRSAELKQCQMMYFLTKMARRPTLVQQLIQKVKRKRELSGGEISKRPRLLGTPCPMNFPKATGTRPDVDYKQDNKDLASLQSELNGLLSETVSNSRIQPAAPSPLKDELCSPGLRTNSSRASANDVSSAACCMMSEKLMAENSVVDEGLDVNDSNIYLELEDLISKPTDWVGSSASGLVGQTGCCKTASTLHTDDAAATAMMMSKLYLGSATYQLEK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1024 494 Coils Coil 243 263 - -
Lele18g1024 494 MobiDBLite consensus disorder prediction 33 86 - -
Lele18g1024 494 MobiDBLite consensus disorder prediction 373 398 - -
Lele18g1024 494 FunFam Heat shock transcription factor 1 124 221 - -
Lele18g1024 494 SUPERFAMILY "Winged helix" DNA-binding domain 127 220 IPR036390 -
Lele18g1024 494 Gene3D - 124 221 IPR036388 -
Lele18g1024 494 MobiDBLite consensus disorder prediction 62 86 - -
Lele18g1024 494 PRINTS Heat shock factor (HSF) domain signature 169 181 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele18g1024 494 PRINTS Heat shock factor (HSF) domain signature 182 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele18g1024 494 PRINTS Heat shock factor (HSF) domain signature 131 154 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele18g1024 494 Coils Coil 347 367 - -
Lele18g1024 494 SMART hsfneu3 127 220 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele18g1024 494 ProSitePatterns HSF-type DNA-binding domain signature. 170 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele18g1024 494 Pfam HSF-type DNA-binding 131 220 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele18g1024 494 MobiDBLite consensus disorder prediction 321 347 - -
Lele18g1024 494 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 117 346 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1024 Lele-ChrLele18 6837910 6840186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1024 117 460 HSF AT2G26150 40.793 9.67e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele18g1024 HSF_DNA-bind 6.6e-32 CL0123