Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1023 ATGGTGGAAGCTCAACTGGAGACTTCAAAACCTTCTGAAATTTTAATGGCTTTTCCTCATTACCGTGGATCACATTTGAAGAGTGGAACTTTTCATACCCTGGTTCGTATCCTATCTCACTGCAGCAATGAGTGCAATCTACCTGGCACGAGTGAAAACCATGCTGCTTCTCAAGAGCCAAAAAATCATGACAATGGCATCGATAGATTGCGGCAAGAAAGCCAGGAAAAGGAGCATGAGAACTCTCAATTTTCTGGTACTGATCTTATGAATCTCAAGCATCCTGTATCCCATAAGTTAAAAGAGGCTCATGAGAGCTCCGATGGTAGGGAGTTTATGATGGGAGTAGAGGAAGATGTAGGCTCTACTGGAAGGCAGGATATGATGATTTGTGGAAGAGAAAGTGTTGAGGCCTTGTCCATGGGAACTAATGGTTTGAATAAGGAACAGAAGATAATGGACGACTTAAATCAGATAGTGAAAGGAGCTGAAGGCCTTGTTGACAATGGCTCAATTCCTTTGAACTTGGGATCAGGAGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATGGATTACCAAGTAGAGCATGTTGAATTTAGAGGATCCGATATCAACACATCTGGAACTGAAAGTGAGTTGTATAAAGAAGGAGAATTTAATCACAATATACCCGAAGGCTTTGATGCATCTTTAATTGCTAAAGAAGGTGAGTTTGAGAAGGACGAACATGGTCAAAAGTTTCAGGTAGCAACACAGCTTTCTCTAGATGACGGTATGAAATATAGCGAAACGTTCAATTTGAGTATTGAGCTTGAGAGACTGCAAGAGGAAATGATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTCTTCCTACTACTGAAGAGGGTAAGTCTGAGAAGGAAGAAGAACATGATCAAAAGGCATGTGAGGCTATGCAATTTTCTGGAGATCAGGGTGCAAATAATGAAGAATCAAATTCAAGTGTAAAGCATGAGAAACAAAAAAGGGAAATAGACTCAGCAAAACCAGTTTGTGCTGCAATGGTATCTCTTCCAAATACCAAAGAGGGTGAGTTTGAGAAGGAAGAACAACATGGTCAAAAGGCTTCTGAAGCAATGCGCATCTCTGTAGGTCAGGCTATGAATAGTGAAGCATTAATTTCAAATGTAAGGCCCAGTAGACAAGAAAAGGAAATGGAATTGGTGAAACCTGTTTCTACTGCAATTATTTCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAAAAACAGGGGCAAACGGGTCCTGAAGCAATGCAATTTTCAATAGATCAGGATATGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAACAAAAGGAAATGGACTCATTGAAGCCAGTTTGTGATGCAATTGTTTCTCTTCCTACTACCAAAGAGGTTGAGTTTGAGAAGGAAGAACAACATGGTCAAAAGGTTCCTGAAGCAATGGACATTTATGTAGATCAGGGTATGGATAGTGAAGCATTGATTTTAAAAAGAAAGCCTGAAAGACAACAAAATGAAATGGAATTGGCGAAACCTGCCTATGCTGAAATTGTTTCTCTTCCCGGTATTGAAGAGGATGAACTTGAGAAGGAAGAACATAATGGTAGTGATGGTTCCAAACCCACTAAGACATATACAAGAAAGAGTAAGAAGAGGGATTTGGACCACTCGGGCTTGGACCCATCTGGTAGAAAGGTCACTGAAGCAATGCACTTATCTGTAAATCAGGGTATAAATGGTGAAGCATTAAATTTGAGCGAACATAGTGAAGAGATGTCATTCATGGACATTGATATTTTGGATGCTAAACATATAATGCAGCATGAAGAAGAGCAGCCAGAAAAAATAAATTGCGCAAATGATGCAACATTTTCCAATCATCCAGATAAGGAAGACACTGAAGAGGGAGAAATTTCAGGTGACTTTAGAGTGGACGAGAATTCAATTGATGCATCTTCTGCAGATTCTTTGATGATAGAACAGAGGAAACGTGATGTAGAAAGGCCCAAACATGTTATTGAAAATATAGTATTTCCTTTTAATATACAGAAAGAAGAAAAAGAAAAAAAATATGAATCATCTCAAGATGCCTGTAATAGTGGACTAATGGAGCCTAGGAAAAGTGATAAAAATGAGTTTCCAAATGGAGTTGACCTTGGAATCTCTCGGGAAATTATTGATTATGGAGATCTAGTGGAACATGGTTCAGTATTGGTGACTGGAAAAAGTCAAGGCAGTGGAATTAAAGGGGTTGTTGGCTTGCCACCAACTTTGGCTAACAAAAAAGTCTTGCCCAACGTCGTCTTGGAAGAAGAAACCACTGAAGATCATCAAAACACATCTGCAGTGAAGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAAGAAGGCTAAAAAGAAGGAAAAGAAAAGAAAGCAGCGGGCAGAAAAGAACAGAAAACTTGGTGTTAAAAGGTTGAAGTTGCAGCCAGTACAGAAACCAAAAACCATCACATATTGCCGCCATTATCTGAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTACCTCTGACAAAATCAAAGCCATGCTGTCATTTTGCTCGTCACTCTTGCATGAAAGGTGATGATTGTCCATTTGATCATGAGCTCTCCAAGTATCCTTGTAGCAATTTTGTGACTAAAGGTTCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAACCAAGCAAGATGTTGCTACATCTTCAAATGATGGCAAAGCTGAGTTGAAGCCTATACCATTAGGAAATACAAAATTGAGTAAGCCCCCTAACATCATCAGCACCAGTGCTTCTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAATGTCAATTCAATTCAGGAAAAGAGGAGGCAGACACTGTAAAGAAACCACCGACAAGGGCACCTAAAGGAATTAGTTTCCTCAATGTTTCAAAACCATCATCTCCTAAACAAGTGTTGGTAACTCCAAACAAGGAAAGCTCTGTTCAAATTGGGACCCTTACTGACCAAAGTGCCTCTGGCACGGCTTTAAACTCGATGAATCCTGAGAAAACGCCAGTGATGGCACCTAAAGGAATTAACTTCCTTTCATTTGGAAAAGGACGTGTTTCCAGTTTCAAAAGTACTGTGTGCTCCTTTTTTAATAAGGAACGTGGTATCAAGTTGTCTCACAAAGAAAGTTTGGGTACGCCTGAACAAGCATCTCTAGAGGAGGAGGATTGCAGTAAAGTCAACAGTGGGACAAAACAAAGTGTACTGCAAAATCAATGTATAGGAGAGAAAATGGATTTGGGTTTTCGAGGAAAAGCTTCAACAGATCATTATAGTAATGATGTACAATTTAGCTCAATCTCTCGTGAGGATCACAGTCTTAGTAGATCAGTGCAAGAGGGAGTAAAGGCATATACTCCTCAGACTTCAAATCTGACCTCGTTATCTATGCTTCCGACTTCTCCATTTGTTTCAGGTCAATCTTCAGAAGGCCTAGCATCTGGACATCATAAGCTCGTATTTAACTCAGCCCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTCCTTTGTCGGTGCATCAGCTGTGAAATTAGAGATGAACAAGAATTATAGCAGTTCATAG 3750 0.4 MVEAQLETSKPSEILMAFPHYRGSHLKSGTFHTLVRILSHCSNECNLPGTSENHAASQEPKNHDNGIDRLRQESQEKEHENSQFSGTDLMNLKHPVSHKLKEAHESSDGREFMMGVEEDVGSTGRQDMMICGRESVEALSMGTNGLNKEQKIMDDLNQIVKGAEGLVDNGSIPLNLGSGENQNGSSEVDLMDYQVEHVEFRGSDINTSGTESELYKEGEFNHNIPEGFDASLIAKEGEFEKDEHGQKFQVATQLSLDDGMKYSETFNLSIELERLQEEMMELVKPVSAAVVSLPTTEEGKSEKEEEHDQKACEAMQFSGDQGANNEESNSSVKHEKQKREIDSAKPVCAAMVSLPNTKEGEFEKEEQHGQKASEAMRISVGQAMNSEALISNVRPSRQEKEMELVKPVSTAIISLPTTEEGEFKKEEKQGQTGPEAMQFSIDQDMNNEASNSHIKHEKQQKEMDSLKPVCDAIVSLPTTKEVEFEKEEQHGQKVPEAMDIYVDQGMDSEALILKRKPERQQNEMELAKPAYAEIVSLPGIEEDELEKEEHNGSDGSKPTKTYTRKSKKRDLDHSGLDPSGRKVTEAMHLSVNQGINGEALNLSEHSEEMSFMDIDILDAKHIMQHEEEQPEKINCANDATFSNHPDKEDTEEGEISGDFRVDENSIDASSADSLMIEQRKRDVERPKHVIENIVFPFNIQKEEKEKKYESSQDACNSGLMEPRKSDKNEFPNGVDLGISREIIDYGDLVEHGSVLVTGKSQGSGIKGVVGLPPTLANKKVLPNVVLEEETTEDHQNTSAVKKAGISCKKKRGPVTEEKKAKKKEKKRKQRAEKNRKLGVKRLKLQPVQKPKTITYCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFVTKGSCSRGNACMFSHQMPTKQDVATSSNDGKAELKPIPLGNTKLSKPPNIISTSASQQKQISDSKGIQCQFNSGKEEADTVKKPPTRAPKGISFLNVSKPSSPKQVLVTPNKESSVQIGTLTDQSASGTALNSMNPEKTPVMAPKGINFLSFGKGRVSSFKSTVCSFFNKERGIKLSHKESLGTPEQASLEEEDCSKVNSGTKQSVLQNQCIGEKMDLGFRGKASTDHYSNDVQFSSISREDHSLSRSVQEGVKAYTPQTSNLTSLSMLPTSPFVSGQSSEGLASGHHKLVFNSAQRALLSTLSFAAEHESNIKLKSFVGASAVKLEMNKNYSSS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1023 1249 Gene3D - 881 945 - -
Lele18g1023 1249 Pfam CCCH-type zinc finger 856 875 IPR041367 -
Lele18g1023 1249 SUPERFAMILY CCCH zinc finger 850 875 IPR036855 GO:0046872
Lele18g1023 1249 Coils Coil 814 834 - -
Lele18g1023 1249 FunFam C3H-type transcription factor 808 879 - -
Lele18g1023 1249 ProSiteProfiles Zinc finger C3H1-type profile. 879 906 IPR000571 GO:0046872
Lele18g1023 1249 MobiDBLite consensus disorder prediction 73 92 - -
Lele18g1023 1249 Gene3D - 805 880 - -
Lele18g1023 1249 ProSiteProfiles Zinc finger C3H1-type profile. 909 932 IPR000571 GO:0046872
Lele18g1023 1249 MobiDBLite consensus disorder prediction 544 582 - -
Lele18g1023 1249 SMART c3hfinal6 851 876 IPR000571 GO:0046872
Lele18g1023 1249 SMART c3hfinal6 907 931 IPR000571 GO:0046872
Lele18g1023 1249 SMART c3hfinal6 879 905 IPR000571 GO:0046872
Lele18g1023 1249 MobiDBLite consensus disorder prediction 789 837 - -
Lele18g1023 1249 MobiDBLite consensus disorder prediction 565 579 - -
Lele18g1023 1249 MobiDBLite consensus disorder prediction 821 837 - -
Lele18g1023 1249 MobiDBLite consensus disorder prediction 319 342 - -
Lele18g1023 1249 SUPERFAMILY CCCH zinc finger 908 934 IPR036855 GO:0046872
Lele18g1023 1249 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 539 1237 IPR045124 GO:0003723|GO:0045892
Lele18g1023 1249 MobiDBLite consensus disorder prediction 935 962 - -
Lele18g1023 1249 ProSiteProfiles Zinc finger C3H1-type profile. 850 877 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1023 Lele-ChrLele18 6825990 6831558 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele18g1023 zf-CCCH_4 2.3e-06 CL0537