Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1019 ATGGACACTGTCTTCTCCCTCCCCGAGCCTGCCAGAGCTCATTTTCTGCAGTCCATACTGCAGTCCTCTGACTGCTCTTACATTTGTCTTTGGTTCTATGATTCCCTCTTATCCAATCGTTTGCGGTGTTTGGATGGATTGTTGAATGTAAGAATCAACCAACCGGGCACCTCTTTTGGGAGTAGTGTAGCTCAAAGGCTTTTTGACCAATACAGGAGTTTAGTATTTGATGTCAATGATAATGACCGTATTCCAGGACTGGCTTTCAAGAACCGCAGCTACCTTGAGCTTCAGCAACCAGATCTTCTAAGACTGGCATGGACACAAGTACAGACACAATTTTATCAGGAAGCAAGGATTAAGACTGCTGTCTTCATGGGTTGCAACAATGGAGAAATGGAACTTGGCTTCCCAAACATGTCTCAAGATGATATTCAAAGAGCACTGAGGAATTGGTTCCCAGATGAATTTTCCAGATTACAGTCATCATCATCTCTGCAGGCAAACATTATTGATCAGAGTCATCAGAACCCACCTTCATCATCTTCATCTTCATTAAGATCACTCTCACTGTCTGCAGGAAGCCCTGAATACTCATCCCTTCTGCTCAACATTAATCCTCCAGCTGGATCTTCTCCTCATTTTCCTCCTCCTCCTCAAGATCAATCCCTCACAACAGCTCCTTCTTCTAGCCCAATACACCAGCAAGTAGTCATCCAAGCTCTAGCACAAGCCACATCTCAGAGCCCATTTCATTCACCAGAGACTGAAAATGATGCCATCATGAGAGCAATCCTTCATGTCCTTTCTTCTACTAATTCATCATCACCTTCTTCTTCAACCTCCCTTCATCATCATCAACAGAAATTGCAGCCTAATTATATGGTTCAACCTGAGACCAGTGCCTTCAAGATGTATAACCCCATTCTTATCCCACCACCATCTTCCCAAATGGGACCTGCAGATCAATTGCGCAGGCAAAGTTTGTTTAAGAGGTCATTGACGTTCTTTAGAGGCTTGAATAATTTCATGAGAATGAGAGAACGTATTCAAACAACTCGCCCCAGCACTACACAGCTTCATCACATGATTTCAGAAAGACGAAGGCGCGAAAAGCTCAACGAGAACTTTCAGTCTCTTAGATCACTCCTTCCTCCAGCAACCAAGAAAGACAAAGCTTCGATACTTACAACAGCAAAGGAAGTACTGAGCTCGTTAATGGCGGAGATAGAAAAGCTTAGAGAGAGAAACAAGCAACTGGAGGCAGCAACAACGTTGCCATCAATGGCGGCGGCTGCTCCAGCAGCTGTCAAAGAAGCAAGAAGTGATGATCATGAAATCGAAAATGAAAGGTTAAATGTGAGAATTTCAGGTGAATTACCATCAGAATCAAGCTCATCGGAAGAGAGAATGGTGGATTTGGAAGTGACGGTGAGGGGACAAAGTTCTCAAGTCGATATTCTGATTCGATTACTGGGATTTCTGAAACAGGATCAATATCTGAGCTTGATTTCCATGGAAGCTAACACGCATTTAGCTCACGCCACTTCCTTCAATCGAATCACCATAAGACTGAGGGTTGAGGGGAGTGAATGGGACGAATCTACCTTCCAGGAAGCAGTGAGAAGAGTTGTTGCTGACCTAGCACAGTGA 1653 0.4404 MDTVFSLPEPARAHFLQSILQSSDCSYICLWFYDSLLSNRLRCLDGLLNVRINQPGTSFGSSVAQRLFDQYRSLVFDVNDNDRIPGLAFKNRSYLELQQPDLLRLAWTQVQTQFYQEARIKTAVFMGCNNGEMELGFPNMSQDDIQRALRNWFPDEFSRLQSSSSLQANIIDQSHQNPPSSSSSSLRSLSLSAGSPEYSSLLLNINPPAGSSPHFPPPPQDQSLTTAPSSSPIHQQVVIQALAQATSQSPFHSPETENDAIMRAILHVLSSTNSSSPSSSTSLHHHQQKLQPNYMVQPETSAFKMYNPILIPPPSSQMGPADQLRRQSLFKRSLTFFRGLNNFMRMRERIQTTRPSTTQLHHMISERRRREKLNENFQSLRSLLPPATKKDKASILTTAKEVLSSLMAEIEKLRERNKQLEAATTLPSMAAAAPAAVKEARSDDHEIENERLNVRISGELPSESSSSEERMVDLEVTVRGQSSQVDILIRLLGFLKQDQYLSLISMEANTHLAHATSFNRITIRLRVEGSEWDESTFQEAVRRVVADLAQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1019 550 Pfam Helix-loop-helix DNA-binding domain 361 406 IPR011598 GO:0046983
Lele18g1019 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 406 IPR011598 GO:0046983
Lele18g1019 550 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 547 IPR044658 -
Lele18g1019 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 428 IPR036638 GO:0046983
Lele18g1019 550 MobiDBLite consensus disorder prediction 202 233 - -
Lele18g1019 550 Gene3D - 356 427 IPR036638 GO:0046983
Lele18g1019 550 Coils Coil 396 423 - -
Lele18g1019 550 SMART finulus 363 412 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1019 Lele-ChrLele18 6801978 6807012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1019 1 550 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.249 3.53e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele18g1019 HLH 1.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g1019 18 6801978 6807012 Lele20g0402 20 11742571 11747495 hybridization