Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1007 ATGCCTAATATTATAGATCTTAATATTGTTGAAGATCAAAGCCATGAGCTAATTTTTAGCCCAACCCACCATAACCAACCTTCTTCTTCTTCCTCTTCTCTATCATCATGCCCAATTCTCTTTAACCCCTCTCATCATCAGCAGGATCAGGCTCATGGATCTTCCTTCTGGGACTCCAAGAACTTACAAAATCATGATTATGACGAGGCGGGCGGGAAGAATATTATTGGTTCAAGTGGTGGATCATGGAATGATCCAGAAGAAAAGGGTGGGGGTGTTGTTGAGATCAGAAAGAGAAGCCTGAAACTGAAAGTTTGGAAGAGATCATCAGCATCAGGATCAGAAAGGGATCATCAGGATGATGAAAATCATCAAACTGATCAGGATAATGATGATTCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGCTTCAGATCATAATAATAAGGCTTCTTCTTCTTCTTCTGATATCAATATACCCTCTCGGCAGATTATTTACTCTGAAGATCAGAATCAGAATCAGAATCGAGAAAGAGCATTATTATTGTCTCCTCGAGGAACTGATAATGATGGTAGCAGCAGCAACAATTCTTCAACGCACTGTAACAGTAATATCACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTCTGGAGAAGTGGACCAAGAGGTCCTAAGTCACTATGCAACGCTTGTGGGATTCGACAAAGGAAAGCAAGGCGAGCTATGGCGGCGGCGGCTGCTGCAAATGGGTCACCGCCGGATCAGCAGGTGGCTAAGAAATATTCTGCAGTGAAAGGGACTTACAATGTTCATAGCAGCAAAAAGAAGAAGTTGAAATTGGAGTGTGACAGGACTCATCAGATGAAGAAGAAGAACAAGCTTGAAGATGATCATCATCATCATCAAGCAAAGGCATCAGCTAATAATAACAATAATTCAAGAGGGAGATCACCATCATCATCATCAATAATAAACAAGTTTAGTTTTGAGGATTTCATGGTAAGCTTGATGAGTAAGAACTTGGCAGATTCATCCCAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTTGTTCATGGATGA 1143 0.4164 MPNIIDLNIVEDQSHELIFSPTHHNQPSSSSSSLSSCPILFNPSHHQQDQAHGSSFWDSKNLQNHDYDEAGGKNIIGSSGGSWNDPEEKGGGVVEIRKRSLKLKVWKRSSASGSERDHQDDENHQTDQDNDDSVKWMPSKMRMMRKMMASDHNNKASSSSSDINIPSRQIIYSEDQNQNQNRERALLLSPRGTDNDGSSSNNSSTHCNSNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAANGSPPDQQVAKKYSAVKGTYNVHSSKKKKLKLECDRTHQMKKKNKLEDDHHHHQAKASANNNNNSRGRSPSSSSIINKFSFEDFMVSLMSKNLADSSQVFPQDEKEAAILLMALSCNGLVHG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1007 380 MobiDBLite consensus disorder prediction 299 331 - -
Lele18g1007 380 ProSiteProfiles GATA-type zinc finger domain profile. 214 246 IPR000679 GO:0006355|GO:0043565
Lele18g1007 380 CDD ZnF_GATA 215 243 IPR000679 GO:0006355|GO:0043565
Lele18g1007 380 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Lele18g1007 380 MobiDBLite consensus disorder prediction 20 61 - -
Lele18g1007 380 MobiDBLite consensus disorder prediction 109 135 - -
Lele18g1007 380 MobiDBLite consensus disorder prediction 315 331 - -
Lele18g1007 380 MobiDBLite consensus disorder prediction 105 135 - -
Lele18g1007 380 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 250 - -
Lele18g1007 380 SMART GATA_3 210 261 IPR000679 GO:0006355|GO:0043565
Lele18g1007 380 Gene3D - 211 255 IPR013088 GO:0006355|GO:0008270
Lele18g1007 380 MobiDBLite consensus disorder prediction 20 91 - -
Lele18g1007 380 FunFam GATA transcription factor 21 210 323 - -
Lele18g1007 380 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Lele18g1007 380 MobiDBLite consensus disorder prediction 299 314 - -
Lele18g1007 380 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 12 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1007 Lele-ChrLele18 6707349 6708843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1007 93 380 C2C2-Gata Transcription Factor Family AT4G26150 33.887 2.19e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele18g1007 GATA 5.2e-17 CL0167