Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0977 ATGGAGAACTTCGGTGATGAATTCAAGCATTACTGGGAGATGCAAATGTTCTACCAAACAGAAGAGCTTGACAGCTGGGGACTGGACGAGGCAATCTGCCGCTACTATGACTCGAGCTCGCCGGACGGCCACGCTTCATCGTCGACAGCCTCCAAGAACATCGTCTCGGAGAGGAATCGCAGGAAGAAGCTCAACGAACGGCTCTTCGCTCTCAGAGCAGTGGTTCCTAAGATTAGCAAGATGGATAAGGCGTCGATAATAAAGGATGCGATTGAGTACATTCAACACTTGCACGAACAAGAGAAGAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGGAAGAGCATGAACACGGACATGAACATGCACATGATGATGATGATGAACAGAAACAGTGGGAATCAAAATCCGAGCTTTGAATATGAACAAGACCTGCCTGTTCTTCTCAGGTCCAAGAGGAACAAGTCAGAGCAGCAGCAGCTTTTTGAGTCCGTCAGCTCAAGAAATTGCCCCATTGAAGTCCACGAGCTAAGAGTGACATACAAGGGAGAGAGGACGTTAGTGGTGAGCTTGACGTGCGGGAAGAGGACAGACACAATGGTAAAGCTGTGTGAACTGTTTGAATCGTTGCAGCTCAAAATTATAACTGCTAACATCACTGCCTTGTCTGGCCGCCTCCTCAAGACCGTCTTCATTCAGGCGGATGAAGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCGGCCATTGCAGCTCTGAATGATCCTGAAATCCCAATCAGCATGTAA 792 0.476 MENFGDEFKHYWEMQMFYQTEELDSWGLDEAICRYYDSSSPDGHASSSTASKNIVSERNRRKKLNERLFALRAVVPKISKMDKASIIKDAIEYIQHLHEQEKSIEAEIMELESGKSMNTDMNMHMMMMMNRNSGNQNPSFEYEQDLPVLLRSKRNKSEQQQLFESVSSRNCPIEVHELRVTYKGERTLVVSLTCGKRTDTMVKLCELFESLQLKIITANITALSGRLLKTVFIQADEEEKDVVQIKIQAAIAALNDPEIPISM 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0977 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Lele18g0977 263 SMART finulus 54 103 IPR011598 GO:0046983
Lele18g0977 263 Coils Coil 94 114 - -
Lele18g0977 263 Gene3D - 43 114 IPR036638 GO:0046983
Lele18g0977 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Lele18g0977 263 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 116 - -
Lele18g0977 263 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Lele18g0977 263 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0977 Lele-ChrLele18 6421041 6426166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0977 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 55.696 2.68e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele18g0977 HLH 4.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0977 18 6421041 6426166 Lele19g1006 19 6365965 6371676 hybridization
Lele18g0977 18 6421041 6426166 Lele20g0441 20 12094710 12102411 hybridization