Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0973 ATGCGGGATAGTGAGAAGAATGTAAATATCAGAGGATCTAGTAAATACAAGAATTCAAATGCAATACAAACTGAGTTAAAGCCATGCTCATCATTGAAAATCAAAACCAGTAGCCCAAAATCCCAAGTGAAGAAGCATAAATTAAAACCAAAATCTCGTGCACACAGAGTTGGTGCAAATATATCAAGGAAGGCAGTCTCTGACTCTTCAAAGGAGGACACAAGCAATGACTTTTCAGATAAAAACTTGATCATTAGAAAAAGTCTACATACAACTAATGGAAATCCATCACAAAAGCCCAGCACATCAAAGCCTCAAGGTGAAAAAGTTTCTCTTGGCTCTAAGAAAGAGGGTAAAGATGTTGACGGGGAGGTAAATGCTCAGAAGCTTAAAAGGAGAACGAGAAAAAAGAAAAATCGAAGAAATAATATGGATCTTGATGATGCTTCACGCCTGCAGAGGAGACTAAGGTATCTTCTGATTAAAATAAAGAGGGAGCAGAACCTCATTGATGCTTATTCTGGAGAAGGTTGGAAAGGTCAGAGTCAGGAGAAGATCAGGCCAGAAAAGGAGTTGCTAAGAGCTCGGAAGCAGATTTTACAATGTAAGCTTAGTATTCGTGATGCCATTCACCAGTTGGATACTCTTAGTTCCGTGGGTAGCATTGAGCGCTCTGTCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAGCTGCGTGAAGCTTTCCCAGATAATGATATTATACTATGTGATGGCACCTGTAACCGTGCTTTTCACCAAAAATGTCTTGATCCTCCAATGGACACTGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGCGAATGTAAGATGGAAATACTGGAGGCAATAAATGCACATCTTGGGACTCATTTCTCCCTAGACAGCACTTGGCAGGATGTATTCAAGGAAGAAGCTTCCGTACCTGATGGTGATGGTAGTTTACTGAATCCAGAAAAAGAATGGCCATCAGATGAATCTGATGATGATGATTATAATCCTGAAAGGAGAGAGGATAGCCACAATATCAGTGCAGAGGATATTGATGGCGATGCATCTGATGATTCAAGCAGTTCTACCAGTCTATGGAATTCAGATGATGGATATTCTCCAGGAATAGGAAAGGATAGCATTGACCATGAATTTTTCTCTGTGAATAGTAGCATAGATTCTGACGAATCTGGAGAGATAGCGTGTGGCCGGAGGCAGCGAAAAGCAGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAACAAGTCAGTGAAGATGAAGACTGGGGTCCAGGCAGAAGAAAGCGAAGAGAAAAAGAATCTGATGCTGCTAATACTCTGATGACTCTCCATGAAAGTGAGAACAAATGTTCCAACAATGAGCAGAATGTGGTAAAGGAATTTTCTTCAGACTTCCAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCAGTTGAGAAGCTCCGCCAGGCTTTTTCAGAGAATGAACTTCCTCCCAAATCCGTGAAGGATGGTCTTTCAAACGAGTTGGGAGTAGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAGCTAGAAAGCAAGCAGAAGGAGCAGAACAGCCTCAGAGCGTCACTTCTAGAAACCCAGAAGATTCTAATTTACAAAATCTGGAGATAGAGCATTTGACATCCAAGGAAGCCTCAGAAGCAACTTTGACTGACCCCCAGACGAATGCTACAAATGAAAGCCACAAAAAGCGCATAAAGTCATCCCGTGGTAATCCTTTGAAGAAAAGGAAACAAGAGATATATCCATCTCAGTCAAAAGAAAACGGCAGGAAGGACTTGGTTGAGTTCAGTGATGATGTTAGCTTGAAGAAACTGTTGAAAGCAAAACGGAAGAGAGTAACTTATAAATTTGAGGGAGATTCTGAAGCAGCAGAGATAGAATTTGAAAGACTTAGCAAACTGAAGAATAGAGTAGACAGTATGAAGCAAAAAGTTCTTAGAATTAAAAGTCACACGGCAAAGGGTTCAGAAGAACCCAAATCCAAAGAGCATTTGGTTATATATGTACCTGTAGCTGAGTTAAAAGAAAAAAGTTGA 2172 0.4056 MRDSEKNVNIRGSSKYKNSNAIQTELKPCSSLKIKTSSPKSQVKKHKLKPKSRAHRVGANISRKAVSDSSKEDTSNDFSDKNLIIRKSLHTTNGNPSQKPSTSKPQGEKVSLGSKKEGKDVDGEVNAQKLKRRTRKKKNRRNNMDLDDASRLQRRLRYLLIKIKREQNLIDAYSGEGWKGQSQEKIRPEKELLRARKQILQCKLSIRDAIHQLDTLSSVGSIERSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPMDTENIPPGDQGWFCKFCECKMEILEAINAHLGTHFSLDSTWQDVFKEEASVPDGDGSLLNPEKEWPSDESDDDDYNPERREDSHNISAEDIDGDASDDSSSSTSLWNSDDGYSPGIGKDSIDHEFFSVNSSIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPALEQVSEDEDWGPGRRKRREKESDAANTLMTLHESENKCSNNEQNVVKEFSSDFQSKRPCFRLPRHAVEKLRQAFSENELPPKSVKDGLSNELGVDADKVSKWFKNARYLALKARKQAEGAEQPQSVTSRNPEDSNLQNLEIEHLTSKEASEATLTDPQTNATNESHKKRIKSSRGNPLKKRKQEIYPSQSKENGRKDLVEFSDDVSLKKLLKAKRKRVTYKFEGDSEAAEIEFERLSKLKNRVDSMKQKVLRIKSHTAKGSEEPKSKEHLVIYVPVAELKEKS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0973 723 Gene3D - 495 561 - -
Lele18g0973 723 CDD homeodomain 496 556 IPR001356 GO:0003677
Lele18g0973 723 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 13 722 - -
Lele18g0973 723 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Lele18g0973 723 MobiDBLite consensus disorder prediction 1 148 - -
Lele18g0973 723 SMART PHD_3 239 292 IPR001965 -
Lele18g0973 723 Pfam PHD-finger 239 294 IPR019787 -
Lele18g0973 723 SUPERFAMILY FYVE/PHD zinc finger 231 297 IPR011011 -
Lele18g0973 723 SMART HOX_1 495 557 IPR001356 GO:0003677
Lele18g0973 723 MobiDBLite consensus disorder prediction 324 392 - -
Lele18g0973 723 MobiDBLite consensus disorder prediction 110 129 - -
Lele18g0973 723 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Lele18g0973 723 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Lele18g0973 723 MobiDBLite consensus disorder prediction 351 365 - -
Lele18g0973 723 Pfam Homeodomain 504 548 IPR001356 GO:0003677
Lele18g0973 723 MobiDBLite consensus disorder prediction 554 637 - -
Lele18g0973 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Lele18g0973 723 ProSiteProfiles 'Homeobox' domain profile. 493 553 IPR001356 GO:0003677
Lele18g0973 723 MobiDBLite consensus disorder prediction 85 109 - -
Lele18g0973 723 MobiDBLite consensus disorder prediction 560 583 - -
Lele18g0973 723 FunFam pathogenesis-related homeodomain protein 495 559 - -
Lele18g0973 723 MobiDBLite consensus disorder prediction 11 38 - -
Lele18g0973 723 MobiDBLite consensus disorder prediction 440 464 - -
Lele18g0973 723 MobiDBLite consensus disorder prediction 66 84 - -
Lele18g0973 723 Coils Coil 669 689 - -
Lele18g0973 723 CDD PHD_PRHA_like 239 291 IPR045876 -
Lele18g0973 723 MobiDBLite consensus disorder prediction 39 58 - -
Lele18g0973 723 SUPERFAMILY Homeodomain-like 495 561 IPR009057 -
Lele18g0973 723 MobiDBLite consensus disorder prediction 602 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0973 Lele-ChrLele18 6389593 6394183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0973 142 605 Homeobox Transcription Factor Family AT4G29940 55.187 7.32e-160 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lele18g0973 Homeodomain 2.8e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0973 18 6389593 6394183 Lele19g1001 19 6329114 6333950 hybridization
Lele18g0973 18 6389593 6394183 Lele20g0445 20 12129567 12139401 hybridization