Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0950 ATGGAGTGGGACAACAATTCCGATCTCAGCGGGGATGAAGACGAGAGTTTCATGCTCGACGATGCTGGTCCTCTTCCCTTCCCCGTCGGGAACTTGCTCCAAACGGCGCTGTGTGGGATTGTCGTCACTGACGCTCTCGAGCCGGACCATCCCATTATTTATGTCAATACGGTGTACGAGATGGTTACTGGGTATCAGGCAGAGGAAGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGCCCATTTGCTAAGAGAAGGCATCCATTAGTGGACTCAGTAGTAGTTTCAGAAATTAGGAGATGCCTAGAAGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGTTGACACCTATATATGGGGATGATGAGACTATAACACATGTCATTGGAATTCAGTTCTTTGCAGAGGCAAACATTGATCTTGGTCCTGTCCCAAGTTCTACAATTAAGGAATCTGCTAAGTCATCTGATCAATTTCATTCTTCTGCCCTTGCCTCATTACGTCCTCCTCCAACAGGGGACCGTAATGTTTCTCGTCGAGTTTGTGGGATATTGGAGTTGAGTGATGAGGTGTTGTCTCTCAAGATACTTTCTCGCCTAACTCCAAGAGATATTGCGTCAGTTGGCTCTGTTTGCAGGCAATTGTATGAGATAACAAGAAATGAAGATCTTTGGAGAATGGTATGTCAAAATGCATGGGGAAGTGAAACTACTCGTGTTTTAGAGACTGTGCCTGCTGCAAGAAGACTTGGATGGGGTAGGCTGGCAAGGGAACTGACAACTCTTGAAGCTGCAGCATGGAGAAAGTTGACCGTTGGGGGTGCTGTTGAACCCTCGCGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTGTTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTACTAGATCTCAATTCTCGTAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCAGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGCTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTGCTGGACCTAGATGCAAAGCCTCCGACTTGGCGTGAAATTTCTGGATTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTTTTGAGCGATACATTCCTGCTTGATCTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTCGCATGGACCCCGCCTTCTCGTCTGGGCCACACACTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCATTGCGGTTCCGCTCTAGTGATGTATTCACGATGGATTTGAGTGAGGAGGAGCCATGCTGGAGATGTGTAACTGGTAGTGGAATGCCCGGTTCTGGGAATCCTGGGGGCATCGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCTGGCGGGAGAATTCTGGTATTTGGAGGGTCTGTTGCAGGTCTTCATTCTGCCTCCCAGCTCTACATACTGGACCCAACTGATGAGAAACCTGCATGGAGAATCTTAAATGTCCCGGGGGCCCCCCCGAGATTTGCTTGGGGACATAGCACTTGTGTTGTTGGAGGGACAAGAGCAATTGTACTGGGTGGTCAGACTGGAGAGGAATGGATGCTAAGCGAGCTCCATGAACTTTCTCTGGCAAATTCTGTGATCTAA 1836 0.4847 MEWDNNSDLSGDEDESFMLDDAGPLPFPVGNLLQTALCGIVVTDALEPDHPIIYVNTVYEMVTGYQAEEVLGRNCRFLQCRGPFAKRRHPLVDSVVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFAEANIDLGPVPSSTIKESAKSSDQFHSSALASLRPPPTGDRNVSRRVCGILELSDEVLSLKILSRLTPRDIASVGSVCRQLYEITRNEDLWRMVCQNAWGSETTRVLETVPAARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSRNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPGGIAPPPRLDHVAVSLPGGRILVFGGSVAGLHSASQLYILDPTDEKPAWRILNVPGAPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLANSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0950 611 Gene3D PAS domain 22 158 - -
Lele18g0950 611 Pfam Galactose oxidase, central domain 359 406 - -
Lele18g0950 611 CDD PAS 39 146 IPR000014 -
Lele18g0950 611 Pfam Galactose oxidase, central domain 295 345 - -
Lele18g0950 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 28 607 - -
Lele18g0950 611 FunFam Putative LOV domain-containing protein 477 610 - -
Lele18g0950 611 SUPERFAMILY Galactose oxidase, central domain 282 596 IPR011043 -
Lele18g0950 611 FunFam Putative LOV domain-containing protein 272 476 - -
Lele18g0950 611 Gene3D - 440 610 IPR015915 GO:0005515
Lele18g0950 611 Gene3D - 273 425 IPR015915 GO:0005515
Lele18g0950 611 ProSiteProfiles PAS repeat profile. 32 107 IPR000014 -
Lele18g0950 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Lele18g0950 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Lele18g0950 611 Gene3D - 194 243 - -
Lele18g0950 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Lele18g0950 611 TIGRFAM sensory_box: PAS domain S-box protein 49 146 IPR000014 -
Lele18g0950 611 FunFam Adagio protein 1 196 243 - -
Lele18g0950 611 Pfam PAS domain 39 147 IPR000014 -
Lele18g0950 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 147 IPR035965 -
Lele18g0950 611 SUPERFAMILY F-box domain 190 259 IPR036047 GO:0005515
Lele18g0950 611 FunFam Adagio protein 1 27 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0950 Lele-ChrLele18 6127804 6132374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0950 29 148 AGC Kinase Gene Family AT5G58140 30.833 1.95e-13 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0950 18 6127804 6132374 Lele19g0979 19 6106132 6120027 hybridization
Lele18g0950 18 6127804 6132374 Lele20g0469 20 12406588 12411080 hybridization