Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0944 ATGGACATCATGACTTCAGAAGAAATAGAATATCCTTCTTCAAATCATCATGGCGTTCAAGGTAATAAGGAGGCCTGCAAGGAGCAACGATCCAAACTTCCATCAGAGATCAATGAAATGGTGAAACAAGAATCACCATGCGGAACAAGAAAGAACAACCCACCATTACCTTGTTTACTTCAACAAGATGCAGATTTATATCACACCAGCAAAAAGTGCAAAGCAGGTAGCCAAGGAGGCAGGTTTAGTTCAAAGGTGCTTAAAGTGAAAGGTGGAGTTGTTAAGGGGAATAGAGGAAGAGCAGTTGAGAGAGCTAAAGCTTTCAAATCTCAGTATCCCTCTTTCATGATTGTTGCTAGACCATCCTACATTAATGCCTCTAGTCAAGTGGCAATACCATTAGAGTTTGCCAGCAAGTTCTTGGTTTCAAAAAAGAGTGGACAAAGCACGAATCTTCGGACTTCAAATGGGAGAGTTTGGGTTACCAAGTTCATGACAAGGAAACAGGGCACAAAAACAAAGTTTGAACTCTCTACTGGTAGGTGGAAGGCATTTGTGAAGGACAATGACTTGAAAGTAGATGATGTTTGTGTTTTTGAGCTCATCCAAGGACCAACTCATGATGAACTTGATTTTCAAGTTTCAATCTTTCGAAATGCTCCTTTGTCTCAAGGAACAGCAAAACATACCGTTATTAGTGAGCAAGGACAGAAAAACAAGAGAGTGAAAATTAAAACAGAGACTGGGGAGTTTCAAGTTTCTCCAAAGAAGCGTAAATTTACAGAAGCTACTTCTTTCATACAACCTTCTGCTCATAGTTTCAACTCAGAAAAGCCCTTCTTCAAAGTAACCATAGGATCATCGCCCCATTCTCAGGCAGTACCACTTAGTTTTGTAAGGAAGTATTTGAAACAAGGGAAACATTTCGTGGAGCTGCAGGTTAGGGATAGATCAATGAGGGTTAAGTTGATCATAATTACTCGTGGTTCATCAGATCAACGGGGCTTCTTTTCAGAAGGATGGGCTGCATTTCGAAGAGAGAATGATCTGCAAAAAGGAGATTCTTGCTTCTTTGAGCTTCTGAATAGGGATGACATTTATTTCATGAAAGTTTCCATTTTCAAACACTCCTCACCTTAA 1140 0.4 MDIMTSEEIEYPSSNHHGVQGNKEACKEQRSKLPSEINEMVKQESPCGTRKNNPPLPCLLQQDADLYHTSKKCKAGSQGGRFSSKVLKVKGGVVKGNRGRAVERAKAFKSQYPSFMIVARPSYINASSQVAIPLEFASKFLVSKKSGQSTNLRTSNGRVWVTKFMTRKQGTKTKFELSTGRWKAFVKDNDLKVDDVCVFELIQGPTHDELDFQVSIFRNAPLSQGTAKHTVISEQGQKNKRVKIKTETGEFQVSPKKRKFTEATSFIQPSAHSFNSEKPFFKVTIGSSPHSQAVPLSFVRKYLKQGKHFVELQVRDRSMRVKLIIITRGSSDQRGFFSEGWAAFRRENDLQKGDSCFFELLNRDDIYFMKVSIFKHSSP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0944 379 ProSiteProfiles B3 DNA-binding domain profile. 115 220 IPR003340 GO:0003677
Lele18g0944 379 SMART B3_2 115 220 IPR003340 GO:0003677
Lele18g0944 379 SMART B3_2 280 377 IPR003340 GO:0003677
Lele18g0944 379 SUPERFAMILY DNA-binding pseudobarrel domain 110 217 IPR015300 -
Lele18g0944 379 CDD B3_DNA 113 218 IPR003340 GO:0003677
Lele18g0944 379 CDD B3_DNA 280 375 IPR003340 GO:0003677
Lele18g0944 379 Gene3D - 256 377 IPR015300 -
Lele18g0944 379 Gene3D - 93 220 IPR015300 -
Lele18g0944 379 Pfam B3 DNA binding domain 280 374 IPR003340 GO:0003677
Lele18g0944 379 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Lele18g0944 379 ProSiteProfiles B3 DNA-binding domain profile. 277 377 IPR003340 GO:0003677
Lele18g0944 379 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 219 IPR044837 -
Lele18g0944 379 MobiDBLite consensus disorder prediction 1 31 - -
Lele18g0944 379 SUPERFAMILY DNA-binding pseudobarrel domain 274 376 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0944 Lele-ChrLele18 6109212 6111022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0944 270 375 REM Transcription Factor Family AT1G49480 30.000 1.66e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele18g0944 B3 2.5e-15 CL0405