Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0942 ATGCTTTCATTGTCATGTGTTTTAGCTGCCACACTCGATCCGTCTAAATGCAGCAAGTTGAGTATGGAAGAAAAAAGAGAACTTATCTATGAGATATGTAAGTCCCAGGGTGCTTCAGAGATTTTACAGTCATGGAGTCGACAAGAGATTTTGAAAATCCTGTGTGCAGAGATGGGAAAAGAAAGGAAGTACACTGGCTTGACAAAGTTGAAAATCATAGAAAATCTTTTAAAAATTGTCTCTGAAAAGAAGTCAGGAGACCGGGAAATGACAACAGATCTTGAACCACTTTCTCCTGCAAATGAGCGGAAACAAGCTAAAAGGCAGAGAAAAGCAGAGAATCCGTCTCGATTTCCTCTTCCAGCCAAAAATGGTCTAGTTACTAATGTTGATGGAGATTTAGGTAGTAGTAGTACCACATACTGTAAAAATTCAGCTTGCAAAGCTACCCTAAGTCAAGAAGATGCATTTTGCAAAAGATGCTCGTGCTGCATTTGTCATCAATATGATGATAACAAAGATCCTAGCCTGTGGTTAATATGTAACTCTGACCCTCCATGTTGTGGTGTTTCTTGTGGTTTGTCATGCCATCTTGAATGTGCTTTAAAACATGATGGTTCCGGCATTGCCAAAAATGGAGTGCATCCCAAGCTTGATGGGGGTTTCTACTGTGTCTCATGTGGGAAAGTAAATGATCTGCTCGGATGCTGTAGAAAACAACTGTCAATGGCAAAGATTACCAGACGTGTGGACATTCTTTGCTATCGCGTCTCCTTGACCCAAAAACTTTTACAAGGGACTGAAAAGCATAAAAAACTTCATGAAATAATTGATGAGGCTGTGAATAAACTTGAACCTGAGGTTGGCCCATTAACTAGCTCACCAGTGAAGATCGGTAGGGGAATTGTGAGCAGACTTTCATCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGCTTTGGAATCGCTGGATTCATTACTTTCTGAAATGCTCTTGCCTCCATCACCCGGTCCGACTGATCAAGATATGGTGGGATTTGAAGATGTCACTGCAACATCACTCACTGTAGTTTTGGGTTCTGAAAATCAATCTGGGGAAAATATTGTTGGTTACAGCTTGTGGCATCGGGCAGCTCATGATGTGGACTATCCCTTGGACTCAACTTGCACATTGCATCTACCAGACAGAAGGTTCACTATCAGGGATCTAATTCCAGCCACAGAATACATCTTCAAAGTTGTCGCCTTCAATCCTTCGACGGAGTTGAGCACGTGTGAAGCCGGTGTTTCTACTGAGCAAGGCGAGGAAGAGGCGCCCAACTGCTCAACAACAGAGAGAAGTCAGAGCCCAGTAACAAACTGTAGCAGCCTTTCCAATCCTTCTTCAGTAGAAGATGAAACTAACAACAGTAATCCATATTGTAACCACCAGACTGATAACCGAGTGGAGAATCATCTTACTGATCAAAAGGACACTGACAAGCTTGCTTCAGGAACTTTATCCAATGACCCCACTAACTGTTCTAACATAGGTGAAGGTAAACTTCCAGCAGATTCAGATTCCTTATCAGACAAGGTACATGCTGTAGCAAAGACTGGCCCTTTACCCGGTACTGATGTGTTAAAAGCAGAAAAAGAGCACTCACCGGAGGAGCAAGTCACTGAGGACATGAGCACTGATAATGGGCCTAATTCGCCGGCTCAGGCTGGGACGGACAATGTGTTATTACCAGGTAGCTCAGAGGAAGGCCTTCCCAATACTCCATGCAAGTTGGAAATGCTTATGGATGGGCCAGGAAAAAAGGGGAGGTCAAAATCCAGTGGTAAGGCTAGGGCCAAGGCCAAGGATCAAGGAAATGAGTCTGGGAAGAGACAATGCCCTCAAGATGGAAGCAAATCAAAGAAGAGAAAAGTTGAAAGGCCGCATGAAGTTGAGGAGTGTGATGCAGATGGGCTTTCTTCTGACGGGGATTTTGAGTATTATGTGAAGGTGATTAGAAGGCTAGAGTGTGAAGGACATATAGAGAAGAACTTTAGGCAGAAATTTCTGACTTGGTATAGCTTGAGAGCAACAGCCCAAGAAATTAGGGTTGTGAAAGTATATATTGATACATTTATTGAAGATCCAACATCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGACTGCTTATCAATCAAGAGAACATCCATGGTGCCACCTGGGTTCTGCATGAAGCTTTGGCATTAA 2229 0.4329 MLSLSCVLAATLDPSKCSKLSMEEKRELIYEICKSQGASEILQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGDREMTTDLEPLSPANERKQAKRQRKAENPSRFPLPAKNGLVTNVDGDLGSSSTTYCKNSACKATLSQEDAFCKRCSCCICHQYDDNKDPSLWLICNSDPPCCGVSCGLSCHLECALKHDGSGIAKNGVHPKLDGGFYCVSCGKVNDLLGCCRKQLSMAKITRRVDILCYRVSLTQKLLQGTEKHKKLHEIIDEAVNKLEPEVGPLTSSPVKIGRGIVSRLSSGPEVQKLCGSALESLDSLLSEMLLPPSPGPTDQDMVGFEDVTATSLTVVLGSENQSGENIVGYSLWHRAAHDVDYPLDSTCTLHLPDRRFTIRDLIPATEYIFKVVAFNPSTELSTCEAGVSTEQGEEEAPNCSTTERSQSPVTNCSSLSNPSSVEDETNNSNPYCNHQTDNRVENHLTDQKDTDKLASGTLSNDPTNCSNIGEGKLPADSDSLSDKVHAVAKTGPLPGTDVLKAEKEHSPEEQVTEDMSTDNGPNSPAQAGTDNVLLPGSSEEGLPNTPCKLEMLMDGPGKKGRSKSSGKARAKAKDQGNESGKRQCPQDGSKSKKRKVERPHEVEECDADGLSSDGDFEYYVKVIRRLECEGHIEKNFRQKFLTWYSLRATAQEIRVVKVYIDTFIEDPTSLAEQLVDTFSDCLSIKRTSMVPPGFCMKLWH 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0942 742 MobiDBLite consensus disorder prediction 426 649 - -
Lele18g0942 742 Gene3D Immunoglobulins 334 456 IPR013783 -
Lele18g0942 742 SUPERFAMILY Fibronectin type III 344 418 IPR036116 GO:0005515
Lele18g0942 742 MobiDBLite consensus disorder prediction 493 509 - -
Lele18g0942 742 MobiDBLite consensus disorder prediction 100 114 - -
Lele18g0942 742 SMART FN3_2 336 423 IPR003961 GO:0005515
Lele18g0942 742 MobiDBLite consensus disorder prediction 87 122 - -
Lele18g0942 742 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
Lele18g0942 742 MobiDBLite consensus disorder prediction 555 575 - -
Lele18g0942 742 CDD FN3 334 417 IPR003961 GO:0005515
Lele18g0942 742 PANTHER VIN3-LIKE PROTEIN 2-RELATED 11 742 IPR044514 GO:0010048|GO:0040029
Lele18g0942 742 CDD PHD_VIN3_plant 162 227 - -
Lele18g0942 742 MobiDBLite consensus disorder prediction 596 649 - -
Lele18g0942 742 MobiDBLite consensus disorder prediction 540 554 - -
Lele18g0942 742 MobiDBLite consensus disorder prediction 426 480 - -
Lele18g0942 742 ProSiteProfiles Fibronectin type-III domain profile. 339 434 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0942 Lele-ChrLele18 6082225 6085783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0942 9 469 PHD Gene Family AT4G30200 54.000 1.11e-157 469