Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0941 ATGGACTCTTCTTCTTCTTCCTCCTCTAACTGGCTCGCTTTCTCTCTCTCCCACCCCTTATCTTCTTCCTCCTCCCACTTCCCACTCTTCCCTTCCTTCACCTCTCCTTCCCCCACCCCCATTCTCTCTCTCACAGGTAACAACACCGTCGACGCGCCGGCGGATACCAAGGATGGTGCGGTCACAGGAGCACCGACTAGCCTCTCGATGTTCACCGGGGCCCCTAAGTTTGAGGACTTCCTCGGCGGAGCCGCCTCCGCCTCCGCCGCGCCAACAGCTCCTACGCCTCCGCAGTTCTCTGCCGACAACACGCTGAGCACGGTGGTGGACAACGAGATATACGATTCAGAGTTGAAGACGATAGCCGCCAGCTTCCTGCGCGGCTTCGCTTCCGGAGGAGGCCAAGCCCAGCCGCAACAGAAACAGACGCAGCTGATTCCTGCAGAACCGTCCCCAAAGAAGAACGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACGGGAAGATACGAAGCTCATCTATGGGATAACAGTTGCAGAAGGGAAGGGCAAAGTCGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCTGCCAGAGCTTATGATCTCGCCGCCCTGAAGTACTGGGGTCCGACCACCACCACGAACTTTCCGATTTCGAACTACCAGAAGGAACTGGAAGAGATGAAGAACATGACAAGGCAGGAGTTTGTTGCTTCTCTTCGAAGGAGAAGTAGTGGATTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGACATCACCAGCATGGACGATGGCAGGCAAGAATAGGCAGGGTCGCCGGAAACAAGGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCAGCGGAGGCGTATGATATAGCGGCGATAAAGTTCAGAGGAATAAATGCAGTGACCAACTTCGACATGAGCCGCTACGACGTTAAGAGCATTGCCAACAGTAGCCTTCCCATTGGTGGACTCGCCGGCAAGACCAAGAACTCGACGGATTCTTCTCCGTCCGACCACCACGCCAAGAGCCCCGACGGAGCTCGATCTGCCGCCACCGACGACCGAGACATCTCTTCCACCAACTCCTCGGTCACTTTCGCATCACAACCACCACCACATTCAAGCTCTAACAATAATTCTCTCACCTTCGCCATACCCATCAAACAGGACACTTCTTCAGATCATCATTACTGGTCCTCCATTCTGGCCGGTTGCAACAAAAACCCTTCCTTGACGATGCAACCATCTTCCACCACCAATGGCTCCGTGACATCTGTCCTTCCCTTCAACATGGACCTCTCTACAAGTACGAGCGGTATTGAAGGCGGCAACAACAACAACAACAACAATAATGGGTTTTTCAGTGGAGGCATGTTTGTTCATCAACAACAAAGTGGGAATAATAATGGTGGTGGTGGTGGTGGTTCTTCTTCTTCTGGTTCGAGTTCTTCATTGATGATCCCATTGGCCACGCCCATTGCTTTAAATAGTAACCCTAGTTATGAGAGCTCTTCTGGTTATGGAAACTGGAGCATCATTGGTCCTACCCTGCACACCTTCCAAACCCATGCAAAACCCAGTCTCTTTCAAACCCCAATTTTCGGGGTGAAGGAGGAGGAAGATGAAGACGATGATGTGGGGGAGAGTGACAATGATAATTTCACGAGGGCTGACACTAGTAGTACTAACAAAGGGGGTCTTGTCAAAAGTGTTGGATTTTGCTTTTGCTTTCCCCCCCCCCCCCCCCTTTCTTTCTTTCTCATTCTCTCTATTGCCTTTTGCTTTTTGGTCCTTATTCCTTTTACTACTGTGTACTGA 1869 0.5201 MDSSSSSSSNWLAFSLSHPLSSSSSHFPLFPSFTSPSPTPILSLTGNNTVDAPADTKDGAVTGAPTSLSMFTGAPKFEDFLGGAASASAAPTAPTPPQFSADNTLSTVVDNEIYDSELKTIAASFLRGFASGGGQAQPQQKQTQLIPAEPSPKKNVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLAGKTKNSTDSSPSDHHAKSPDGARSAATDDRDISSTNSSVTFASQPPPHSSSNNNSLTFAIPIKQDTSSDHHYWSSILAGCNKNPSLTMQPSSTTNGSVTSVLPFNMDLSTSTSGIEGGNNNNNNNNGFFSGGMFVHQQQSGNNNGGGGGGSSSSGSSSSLMIPLATPIALNSNPSYESSSGYGNWSIIGPTLHTFQTHAKPSLFQTPIFGVKEEEDEDDDVGESDNDNFTRADTSSTNKGGLVKSVGFCFCFPPPPPLSFFLILSIAFCFLVLIPFTTVY 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0941 622 MobiDBLite consensus disorder prediction 350 369 - -
Lele18g0941 622 MobiDBLite consensus disorder prediction 131 156 - -
Lele18g0941 622 CDD AP2 263 324 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 412 - -
Lele18g0941 622 MobiDBLite consensus disorder prediction 475 501 - -
Lele18g0941 622 MobiDBLite consensus disorder prediction 556 576 - -
Lele18g0941 622 MobiDBLite consensus disorder prediction 370 398 - -
Lele18g0941 622 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 SUPERFAMILY DNA-binding domain 263 324 IPR016177 GO:0003677
Lele18g0941 622 MobiDBLite consensus disorder prediction 337 398 - -
Lele18g0941 622 Pfam AP2 domain 165 220 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 Pfam AP2 domain 264 314 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 ProSiteProfiles AP2/ERF domain profile. 264 322 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 MobiDBLite consensus disorder prediction 133 149 - -
Lele18g0941 622 CDD AP2 164 230 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 FunFam AP2-like ethylene-responsive transcription factor ANT 164 230 - -
Lele18g0941 622 ProSiteProfiles AP2/ERF domain profile. 165 228 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 FunFam AP2-like ethylene-responsive transcription factor 263 324 - -
Lele18g0941 622 SUPERFAMILY DNA-binding domain 164 230 IPR016177 GO:0003677
Lele18g0941 622 Gene3D AP2/ERF domain 264 324 IPR036955 GO:0003700|GO:0006355
Lele18g0941 622 Gene3D AP2/ERF domain 165 230 IPR036955 GO:0003700|GO:0006355
Lele18g0941 622 SMART rav1_2 264 328 IPR001471 GO:0003700|GO:0006355
Lele18g0941 622 SMART rav1_2 165 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0941 Lele-ChrLele18 6061976 6065406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0941 112 554 AP2-EREBP Transcription Factor Family AT5G57390 54.978 6.86e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele18g0941 AP2 1.3e-09 CL0081