Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0928 ATGGGTCGAGCTCCATGCTGTGACAAAGCGAACGTGAAGAAAGGACCTTGGTCTCCAGAAGAGGATGCTATACTCAAAGCTTATATCGATAAACATGGAACTGCAGGCAACTGGATTGCTCTTCCTCAAAAGATTGGGCTGAAGAGGTGTGGGAAAAGTTGCAGACTAAGATGGCTAAATTACCTGAGGCCTAATATCAAGCATGGTGGTTTCACTGAAGAAGAAGACAACATCATTAGCAGCCTCTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCGGCTCAGCTTCCTGGAAGAACAGACAACGACATCAAGAATTATTGGAACACAAGACTGAAGAAGAAACTACTTGGTAGGCGAAAATTAGCAGAGAACAGTTCCAATCACGACAAATCTAATAATTCCGATCACATTCTCAGTAACTCGGCTCTGGAAAGGCTTCAACTTCACAATCAACTTCAAAACCCTAATTTATCTTTCTACAACAATCCTTCCCTCTGGCCTAAGTTGCATCCTCTCCAACAAAAAGTAATCCACAACACCCTACAATCCCTCAACCATACCTCTGATTTCACAACCATACCACAAAAAGATCATAATCAACTTCACGAACCAGCTTCTGCCAATTGTACTACTGGTAATGATGCAGTTGTTCAACCAGAAGGTGTAAAGATCAGCAGCAACTCGGCGAGCTCCGGTAATCCGGCGGACATGGGCCGGATTGATGAGTTAGATATGGGAATAGATCGAGTTTCTGCCCTGCAAACTGAGCTTAATGGCATTCTTATGAGTGGTTACGTGACATCATCACAGAAGAAGCAGGAGAAGCAGGTAGGTGGTGAATATGGTTGTTTCGTAGAGATCATGAGTGGTTCATCGAAGGATAATTTGAGCTGGTGGTCCAATGATTTTGATGCCAAATCAGCATTATCCTCGAACTCTGGGGATTCAACTACTACCACTACCAGCACTCCTCAGATTTTTCAGCCAGATGATCATCAGGGGATGTTTCAAGACTATGAACTAGCCCCTCAACGACGACCCGTACTTGAGGCTACCAAGCTCGGTGGAATCTCTGAAGCCGTTGCAGAGGGAAGATCTATACTACGGTCATGTGATTTCGTGCCGGAGCATGGACCCGTTCGGGCATTACATGTCGGGGATGGGTATCTGTTATCGTGGGACTTAGCGGAGTGGACAAGGGAATCGGAGATTCCGAGGAAGCATTTCAAGGGGCGGGAGGATAAGGTGTTCGGAGAATGGATGAGGGAGGGACGGCGAAGGAAGAACAGGTTCAACGGTAAGTGGTCGATGTTTAATTATCCGGAGCCGCCGACGCAACGCACGCATGAGCTGTGGCCGGACACAATCGCCGTGCATTTGTTGAAGAATCAGGAGAAGTGGATTCGAACCCTCAAGTACTTCAATATTGCAGATAGGATGAAGCATTCAAAGTTGTATCATATACCTTAG 1476 0.4607 MGRAPCCDKANVKKGPWSPEEDAILKAYIDKHGTAGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIISSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKLAENSSNHDKSNNSDHILSNSALERLQLHNQLQNPNLSFYNNPSLWPKLHPLQQKVIHNTLQSLNHTSDFTTIPQKDHNQLHEPASANCTTGNDAVVQPEGVKISSNSASSGNPADMGRIDELDMGIDRVSALQTELNGILMSGYVTSSQKKQEKQVGGEYGCFVEIMSGSSKDNLSWWSNDFDAKSALSSNSGDSTTTTTSTPQIFQPDDHQGMFQDYELAPQRRPVLEATKLGGISEAVAEGRSILRSCDFVPEHGPVRALHVGDGYLLSWDLAEWTRESEIPRKHFKGREDKVFGEWMREGRRRKNRFNGKWSMFNYPEPPTQRTHELWPDTIAVHLLKNQEKWIRTLKYFNIADRMKHSKLYHIP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0928 491 PANTHER OS09G0431300 PROTEIN 1 270 - -
Lele18g0928 491 CDD SANT 71 113 IPR001005 -
Lele18g0928 491 Gene3D - 70 141 - -
Lele18g0928 491 CDD SANT 16 62 IPR001005 -
Lele18g0928 491 FunFam Transcription factor RAX3 7 68 - -
Lele18g0928 491 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele18g0928 491 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele18g0928 491 SMART sant 67 115 IPR001005 -
Lele18g0928 491 SMART sant 13 64 IPR001005 -
Lele18g0928 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele18g0928 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele18g0928 491 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele18g0928 491 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele18g0928 491 Gene3D - 7 68 - -
Lele18g0928 491 MobiDBLite consensus disorder prediction 311 331 - -
Lele18g0928 491 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0928 Lele-ChrLele18 5993004 5997570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0928 1 306 MYB Transcription Factor Family AT5G57620 54.545 1.89e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele18g0928 Myb_DNA-binding 2.7e-13 CL0123