Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0900 ATGCCTCCTCCTAGTCCTCCGATTCATCACCATGAACAAACCCAACCAAAGCCAAGCCCCAAGCTCCTCTCAATCCTCCTTAAAGCTGTCATCATGACCTTTCTCACCTCCGTCTTTTTCATCTTCCTCAGTTTCGCCGCCTTCGTCCTCCTCCATCTCTGCTTCATCGGCGGCATCCTCCACCACATCCGCTCCCGCCTCACCATCCAACTCGGAGCTTCATCCAATGGAATCGCGCCACGTGACGTCAAGAAGCTTCCCCACTTCCGGGTTTCTAGAGGGACCGAACCCGGACCCGAGTCCCAATGCGTCGTCTGCTTGGACGGCTTCAGGAGCGGCCACTGGTGCAGAAAGCTCGCCGGATGTGGCCATGTGTTCCACCGGAGATGTGTGGATACGTGGTTGGTGAAGGTGGCTGCGTGTCCCACATGCAGGACACCTGTTCGATCAAATGCAGGGAACGATGTAGGTTCGGCTCTAGATGTCAATAGAGAGGAGGCTATGCGACATCGAACATCCAGTAGGGACAATGCTTTCAGGATTTTTTAG 549 0.5483 MPPPSPPIHHHEQTQPKPSPKLLSILLKAVIMTFLTSVFFIFLSFAAFVLLHLCFIGGILHHIRSRLTIQLGASSNGIAPRDVKKLPHFRVSRGTEPGPESQCVVCLDGFRSGHWCRKLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRSNAGNDVGSALDVNREEAMRHRTSSRDNAFRIF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0900 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 166 - -
Lele18g0900 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
Lele18g0900 182 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lele18g0900 182 SUPERFAMILY RING/U-box 99 151 - -
Lele18g0900 182 SMART ring_2 103 144 IPR001841 -
Lele18g0900 182 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0900 Lele-ChrLele18 5701024 5701572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0900 17 149 C3H Transcription Factor Family AT2G18670 49.265 6.12e-32 112