Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0899 ATGGGCAGAACCAGAACCTTGTTAGAAGTCAAAGGAGCAACCTTTTTGTCTCCCTCATCACAACCCCCATACTTGTTTTCCCCTCCCAACGTTGTTGTTGGATCTGAAGATTCGAACCTAAAAGACAGCGTCAGCCCCAGCGTACTCCTCATCATCATCATCCTCGCCATCGTCTTCTTCGTCTCTGGTTTGCTCCACCTTCTTGTTCGGTATCTATGGCGGCCACAAAACAGAGACCCGGACGATGTAGACGATGTTACCGTTCTTCAGGGACAACTTCAGCAGCTTTTCCACCTCCATGATTCTGGGGTTGACCAATCCTTCATCGACACCCTCCCTGTCTTCCTCTACAAGGCCATCATCGGACTCAAGAACCCTTTCGATTGCGCCGTTTGTTTGTCGGAATTCGAGCCAGACGACAAGCTCCGATTGCTGCCCAAATGCAGCCACGCCTTCCACATGGATTGTATCGACACGTGGCTCTTGTCTCACTCAACCTGCCCTATCTGTCGAGCTTGCTTGCTCAATGATTTCTCCTCCACCAACGCTTGTTCCCCCATTGTTCTTGTCCTTGAATCTGGGAGCGACAACAACTCCAGAGAAATTGCCCCAGAAACAAACGAAACCGGATCCAGGTCGACCCGGTTCGACTCGAATCACGATTCCGGCGAAGTCGTCACTGTGAAACTGGGAAAGATCAGGAATGTCGATAATATCAACAACGGTGAAGGTAGTAGCATTGTCGGTGATTCTGATGATAATAATAATGCAGAAGCAAGAAGGTGTTTTTCTATGGGTTCTTTTGCTTATGTGATGGATGAGAGTTCTTCGCTTCATGTACCCATTAGAGCACAGATCAAGAAGAAGCATGCTCTGCGATTAAGTTCGAACAGGCTTGCAATGTCGGAGTGTGACTGTGAATCGAGAAGGGATTTCAGATTCTCTGGTTCAGATGGGAACAGAATTGAAGAAGAAGTAGGAACTGGGAATTATTCAAGCTCTGGTGGGCTTATTACAAGAAAGGAATGTTTTTCAGTGTCGAAGATTTGGCTTAGGGAGAACAAAGAGAAGAGGGAAAATGGGATTGAGAATTCAACGAGGAGAGCTGTGTCGTTTAGGTTTCCATTGCAGAGAAATGACGAAGGGAAACTGGAATCAAGAAGTACGATTTCTGAGATGGAGATTACAAAATGGGAGAATAATGGAGGAGGTAGTGAATTTGGAACTTGTGATGATGAAGAAAACCAGAGTTGTTACAGTGTAGATTCACAGGCGAATTCTATTAGGGCTCCTTCATTTGCAAGAAGAACTCTGCTTTGGCTCACCGGAAGACCACAGAACAAGGTTGTTCATCATTCATCGTCCTCTGTTTCCGGGGATCTGTAG 1386 0.4639 MGRTRTLLEVKGATFLSPSSQPPYLFSPPNVVVGSEDSNLKDSVSPSVLLIIIILAIVFFVSGLLHLLVRYLWRPQNRDPDDVDDVTVLQGQLQQLFHLHDSGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLSEFEPDDKLRLLPKCSHAFHMDCIDTWLLSHSTCPICRACLLNDFSSTNACSPIVLVLESGSDNNSREIAPETNETGSRSTRFDSNHDSGEVVTVKLGKIRNVDNINNGEGSSIVGDSDDNNNAEARRCFSMGSFAYVMDESSSLHVPIRAQIKKKHALRLSSNRLAMSECDCESRRDFRFSGSDGNRIEEEVGTGNYSSSGGLITRKECFSVSKIWLRENKEKRENGIENSTRRAVSFRFPLQRNDEGKLESRSTISEMEITKWENNGGGSEFGTCDDEENQSCYSVDSQANSIRAPSFARRTLLWLTGRPQNKVVHHSSSSVSGDL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0899 461 Pfam Ring finger domain 128 171 IPR001841 -
Lele18g0899 461 FunFam RING-H2 finger protein ATL46 91 176 - -
Lele18g0899 461 SMART ring_2 129 170 IPR001841 -
Lele18g0899 461 CDD mRING-H2-C3H2C2D_ZSWM2 129 171 - -
Lele18g0899 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Lele18g0899 461 MobiDBLite consensus disorder prediction 197 220 - -
Lele18g0899 461 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Lele18g0899 461 MobiDBLite consensus disorder prediction 197 213 - -
Lele18g0899 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 350 - -
Lele18g0899 461 SUPERFAMILY RING/U-box 108 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0899 Lele-ChrLele18 5693778 5695163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0899 38 457 C3H Transcription Factor Family AT2G18650 43.875 1.81e-88 275