Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0883 ATGCCACGGTTAAACTTCTCTGCAACTTCCATGGGGAAACAAAACAAGAACAGTAACCCTAAGGCAACTAATAACAGTGTGACACCTACCGCCACCACCAAGAAACGAACCAGACGAAGTGTCCCCAGAGATTCACCTCTTCAACGAAGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATGGCAGAACAAGAAAGGACGACAAGGTGCTTATGATGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCAGCGTTAAAATACTGGGGTCAAGATACCATACTCAACTTTCCGTTATCGACCTATCTGAACGAAATGAAACAGATGGAGGGTCAGTCAAGGGAAGAATATCTTGGATCGTTAAGAAGACATCATCATAATGGAAGATGGGAGGCTCGCATTGGCAGAGTTTTCGGCAACAAATATCTTTATCTCGGCACTTATGCTACCGAAGAAGAAGCTGCCACTGCATATGATATGGCGGCCATTGAATACCGAGGGCTTAATGCTGTCACTAATTTTGACCTAAGTCGTTACATTAAGTGGCTTAAGCCCAATATTAATAACAGCATCAACATGATTAATAACAGTAATATGACTGTGCTTAGTGACTCTAACCCTAACCCTAACTCTGATACTAATAACTTCACCCCACCAAACCCTAATAGTTCTCAAGAACAATATGGATTCAATAATTACTTCTTCACCAGCCAGCAGGATTCTTCATTCAGTAGCAGTGGGGACGAAACCACCACCACCACCGGCTTTGCTCAGTCACGGCAGGCGAATGCCACCCACTGCTTGCAACAATGTCAGAAACAGAGTATATCTCCCAATACTGGTAAGAAATTCTTGGAGTTGAGGCTTAAGGCAAAGACCTTGCTTGCCCATAGGCAGACACGGCTGACATCTGACTACTGGATATACAGAAACATGCACGTATCTCTAATCCCAGGAGAACTAAAAGTCCTGTGGGATCAATGGGGCTTAGAAATACTTATGCTTTTCAGCTTCATTTTGCAGCTTATTCTCACAGTCTATGGCAACAGAAGAAAGGATGTTCCAGGTATCTGGATTAGATTAACTGTTTGGTCCTCCTATTTACTTTCTGCTTCACTTGCAAGAATCATCCTAGGCAAGCTAACCGTAATACCAGAAAGTGACCCAGATCAAAGAAATATCAGAAGAGAACTCAAGGCATTATATGCTCCATTGCTTCTGGTTCAAATAGGAAACCCGGACGCCATAACTGCTTACTCCATCGAAGATAACAGATTGGGAGTGAGACAAGTTATTGGCTTTGTTTTCCAAGTTGCTATAGTCACATGGATTATTATCAAGAGCTGGACACATTCTTGGCTATCTTATCTTTACTTGCCATTGCTTGTGTCCGGTTTAATCAAATATGGTGAAGTTGTTTGGGCTTTGAAATCAGCTCTCAGTAAGAAATCTGGTATCATCACTGTTGAAGAAATTGACAAAGAAGCAAGCATGCCTGCTTTGTTCAGAATGCTTCCTCATAATGTCCCTTACATAGAACTCGTCTTACTGGCTTATTATCGCTTTTTCTCGTTGAAGCCTCACCGCGAGAACTGGCTTTACTTGCCTCTTTATGAGTCTCTTCCTCATATGTCCATTGAAGGTTATGAACCAGAGGAGATTTTTCAAATCACAGATGCTGAACTGAGTTTCATGTATGATGTTCTGTACACTAAAGCACCAATAATCTTCACCAAACAAGGTTGTATTCTTCGTGCTGTGAGTTTCTTCAACTTAGTTCTAACTCTTTGTGGATTCTGTATCATGTTTGAACATCATTTTGATCATCATTGGAAAGCCTGGTTTATAGTTGGGATGTTAGCAGGATCTATGCTTCTTGAGGCTTACCAGATTGCTCAATTACCATTCTCAGATTGGGCAATAATTCAACTGATAAAGCACAGAAATCTTCCACTTGTAACACCATGCTTGAGGATTCTAGGCCATAGAGCAAGCAATTGGAAGAGATGGTCAAATATATTACCACAGTTCAACTTGCTGAGTTTTTGCCTCCATGATAAGCCACTGAAATGCAGCAAGATTCTCAGGTTTCGTAGCTTCGACAAGGCGTTTAAGAAACACAGACACAGGACTCGTTTGAAACTGCCCCAAGAACTGAAAGTTCTGATGGTTCAAGAAATGAAACTCATTGATGCAGAAAGAGGACAAAAGCCATTCAACCAAAGAGGAGAATGGTCACTTGGGAGATATAATTGCCTCAGTGACTTCAAATGGAGTCTTAAAAGAGACTTTGACAAAAGCATCACAATATGGCACATAGCCACAGATATCTGTTATTACTCAGAAGATGATCTATGTGATACAGCAACCACAGATTCCAAAACCCAGATGGGAAAATTGCTGTCAAATTACATGATGTATCTTCTGGCAATGCGTCCTCATATGTTGTCCATGGCGACAGCAACAATAATCTTTCGACATGCCTATGACAAGCTCAAGGACTTCGCGCAGAAAGAACGGCTCATAAAAGATGAAGGTGAAGTTTGCAGGATCCTGAGAATGGAAAAAAGTCTTTATTCAATCTCTGAAAGAAGCTCTGAAACTGTGGTTACTTCGAAATGGAATATGTTAAAGGATGCTCAAAGACTTGCAAGGAATCTGATGAAGAGAGAAGATAGATGGAATATTATATGCAGTGTTTGGGTGGAGATGTTGTGTTATGCTGCTTCTAATTGTTCTGCAGATGAACATTCTGAGCAAATAAGGAGAGGTGGGGGCTTGATTACTCATGCCTGGATTCTCTTGTTACATAAGACGGATAAATATCACATCAGTGACTAA 2850 0.4109 MPRLNFSATSMGKQNKNSNPKATNNSVTPTATTKKRTRRSVPRDSPLQRRYEAHLWDKNCWNEWQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYLNEMKQMEGQSREEYLGSLRRHHHNGRWEARIGRVFGNKYLYLGTYATEEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNINNSINMINNSNMTVLSDSNPNPNSDTNNFTPPNPNSSQEQYGFNNYFFTSQQDSSFSSSGDETTTTTGFAQSRQANATHCLQQCQKQSISPNTGKKFLELRLKAKTLLAHRQTRLTSDYWIYRNMHVSLIPGELKVLWDQWGLEILMLFSFILQLILTVYGNRRKDVPGIWIRLTVWSSYLLSASLARIILGKLTVIPESDPDQRNIRRELKALYAPLLLVQIGNPDAITAYSIEDNRLGVRQVIGFVFQVAIVTWIIIKSWTHSWLSYLYLPLLVSGLIKYGEVVWALKSALSKKSGIITVEEIDKEASMPALFRMLPHNVPYIELVLLAYYRFFSLKPHRENWLYLPLYESLPHMSIEGYEPEEIFQITDAELSFMYDVLYTKAPIIFTKQGCILRAVSFFNLVLTLCGFCIMFEHHFDHHWKAWFIVGMLAGSMLLEAYQIAQLPFSDWAIIQLIKHRNLPLVTPCLRILGHRASNWKRWSNILPQFNLLSFCLHDKPLKCSKILRFRSFDKAFKKHRHRTRLKLPQELKVLMVQEMKLIDAERGQKPFNQRGEWSLGRYNCLSDFKWSLKRDFDKSITIWHIATDICYYSEDDLCDTATTDSKTQMGKLLSNYMMYLLAMRPHMLSMATATIIFRHAYDKLKDFAQKERLIKDEGEVCRILRMEKSLYSISERSSETVVTSKWNMLKDAQRLARNLMKREDRWNIICSVWVEMLCYAASNCSADEHSEQIRRGGGLITHAWILLLHKTDKYHISD 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0883 949 MobiDBLite consensus disorder prediction 1 35 - -
Lele18g0883 949 MobiDBLite consensus disorder prediction 205 226 - -
Lele18g0883 949 SUPERFAMILY DNA-binding domain 49 103 IPR016177 GO:0003677
Lele18g0883 949 Gene3D AP2/ERF domain 120 180 IPR036955 GO:0003700|GO:0006355
Lele18g0883 949 Gene3D AP2/ERF domain 39 103 IPR036955 GO:0003700|GO:0006355
Lele18g0883 949 PANTHER OS01G0798800 PROTEIN-RELATED 328 938 - -
Lele18g0883 949 Pfam Domain of unknown function (DUF4220) 367 684 IPR025315 -
Lele18g0883 949 CDD AP2 126 180 IPR001471 GO:0003700|GO:0006355
Lele18g0883 949 MobiDBLite consensus disorder prediction 1 46 - -
Lele18g0883 949 Pfam AP2 domain 125 170 IPR001471 GO:0003700|GO:0006355
Lele18g0883 949 SUPERFAMILY DNA-binding domain 125 180 IPR016177 GO:0003677
Lele18g0883 949 Pfam Protein of unknown function, DUF594 892 940 IPR007658 -
Lele18g0883 949 ProSiteProfiles AP2/ERF domain profile. 37 101 IPR001471 GO:0003700|GO:0006355
Lele18g0883 949 ProSiteProfiles AP2/ERF domain profile. 119 178 IPR001471 GO:0003700|GO:0006355
Lele18g0883 949 SMART rav1_2 50 107 IPR001471 GO:0003700|GO:0006355
Lele18g0883 949 SMART rav1_2 119 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0883 Lele-ChrLele18 5557029 5564518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0883 50 182 AP2-EREBP Transcription Factor Family AT5G57390 58.170 1.27e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele18g0883 DUF4220 1.3e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0883 18 5557029 5564518 Lele19g0916 19 5549373 5549915 hybridization
Lele18g0883 18 5557029 5564518 Lele20g0533 20 12976703 12983051 hybridization