LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0851	ATGCCTGAGCATCTCGCTCTCCGGCCTCCTCCAATTCCAACCCTTGATCGCCGCCCTGTCGAACCAGAGGATAAACGAGTAGGTCGTGATAAAAATGAAGGACAACATGATGAAGATGATGACGACGATGATGCCGAGAAGAAGCACCGGAAACGAGTCTGTGAAGAACCGTCTATCGAGTTACGGAATTGTAAACCTTCGGATGAGGAGGCAGAGCCGCGAGAATCTACTTCTGAAACCCTAGTTACGCCCTCTTCGGTTGAATCGGCGGTGGCTAGTAAGAGTGCTGATTTACAGGCTAGCTCTACGACGCGGACTGATGGCAGAGATGAAAGTGAGGAGACAAATGGACCTTCAAACATGGAAATTGTTGTAAGAGAAACAGTCCAGGGAGCTCAGAATCAGACAGAAGATCTACTTGAGGTTTCTGTATGTCCAACTACGTTGTCTGTCGTATTGCCATCTTCTGTTACACAATCTTTATCATCTGTTCCTAGTTCAACTGTACCAGAGCAAAGGCTATCTCCTCAGAATGTTAATAATTTGCATGTGCTGGGAGCAGGCAAGAAAATTTTTTCTGGTGGTAAACCTTTATCTGCTGTTAATGTTGCAAGGGCATTTGCATCTGATGGATACAACTGGCGTAAGTATGGTCAGAAGCAAGTGAAGAGTCCAACTGGTTTTCGAAGCTATTACAGGTGTACTCATTCAGGGTGTAATGCGAAGAAGATTGAATTTTGCGATCAATCAGGGCATATGATAGAGATTATTTATAAAGGTCAACACAGCCATGAGCCACTACGGAAGACTAACACCACTGGGGAAATTAAGTTCATGCCATCTGATGAACCTACTACTGTAGAAGCCAATCTTCTAGAAAAGCCCATTGGATTGCTCAAGGATGCAGATCCAACCTCTTATACAAAAGAACCTCTACAAGATTTACTGTGCAGCGCTGATAAGAAACGGCAAAATTCATCTGGTCTTAGTGAGAATGGTAAAGTTATTTTGAAGGTGGAGCATGTTGATGAACCAGAGTTGAAAAGAAGAGTGAAGAATGGTGACTTAACAAACTTGGACTCGCATGTGGAACCTGGAAAGGAATCTAAGTATGTTGTGCATGCAGCAGGGGATGTCGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGGCAGAAAATGGTCAGGGGAAATTCCCTTCCCAGAAATTACTACCGATGCACATCTGCTGGATGTCCTGTCCGTAAGCAAATTGAGGCTGCAGTAGACGATCCTAATGCCGTCATCATTACATATAAAGGAGCACATAACCATGACAAGCCTGTGCCCAAGAAACGACATGGCCCACTGAGTGCTCCTCCTGTGCCTGCTACTGCCCCTGCCTCGTCAAACAATTTGCAACTCGTGAGTATTGATTCACAGCAAAACCGAGAAAATTCTGCTCAGTTGTCGGCGGACTCTGAAGAAGAACTAACTGAAGACGCCTCTGACCTTGGGGGTGAGAAAGCAATCGAGTCAGCTAGAACTCTTTTAAGCATGGGTGAAATTAAGCCTTGCTGA	1563	0.4523	MPEHLALRPPPIPTLDRRPVEPEDKRVGRDKNEGQHDEDDDDDDAEKKHRKRVCEEPSIELRNCKPSDEEAEPRESTSETLVTPSSVESAVASKSADLQASSTTRTDGRDESEETNGPSNMEIVVRETVQGAQNQTEDLLEVSVCPTTLSVVLPSSVTQSLSSVPSSTVPEQRLSPQNVNNLHVLGAGKKIFSGGKPLSAVNVARAFASDGYNWRKYGQKQVKSPTGFRSYYRCTHSGCNAKKIEFCDQSGHMIEIIYKGQHSHEPLRKTNTTGEIKFMPSDEPTTVEANLLEKPIGLLKDADPTSYTKEPLQDLLCSADKKRQNSSGLSENGKVILKVEHVDEPELKRRVKNGDLTNLDSHVEPGKESKYVVHAAGDVGISGDGYRWRKYGQKMVRGNSLPRNYYRCTSAGCPVRKQIEAAVDDPNAVIITYKGAHNHDKPVPKKRHGPLSAPPVPATAPASSNNLQLVSIDSQQNRENSAQLSADSEEELTEDASDLGGEKAIESARTLLSMGEIKPC	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0851	520	FunFam	WRKY transcription factor	368	443	-	-
	Lele18g0851	520	Gene3D	WRKY domain	367	443	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	Gene3D	WRKY domain	199	267	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	1	119	-	-
	Lele18g0851	520	ProSiteProfiles	WRKY domain profile.	377	442	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	77	103	-	-
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	42	76	-	-
	Lele18g0851	520	Pfam	WRKY DNA -binding domain	210	265	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	Pfam	WRKY DNA -binding domain	384	439	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	SMART	WRKY_cls	208	266	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	SMART	WRKY_cls	382	441	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	17	35	-	-
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	435	463	-	-
	Lele18g0851	520	SUPERFAMILY	WRKY DNA-binding domain	206	265	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	1	16	-	-
	Lele18g0851	520	ProSiteProfiles	WRKY domain profile.	203	267	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	SUPERFAMILY	WRKY DNA-binding domain	378	442	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0851	520	MobiDBLite	consensus disorder prediction	475	520	-	-
	Lele18g0851	520	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	52	243	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0851	Lele-ChrLele18	5356380	5359607	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0851	198	520	WRKY Transcription Factor Family	AT4G30935	54.294	9.24e-106	322

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele18g0851		WRKY	8.4e-24	CL0274