Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0844 ATGTTATTACTTGAATGGTTTTGCTGCAGAATTCTGATGGAAGAGAACATGTCATGCAAGGCATCAAGTGGTGTGGACAATGCGAGCATAGAAGGTTTAGATCCAAATATCAGCTGTTATTCCGCCTATCCAAACAAACATTCAGGACATTGCAGCAAGGAATCGGTTAATAAATTCAAGGGCATTATGCCACAGCAGAATGGAAACTGGGGTTCTCAGATGTATTCTAATGGCCATCAGATTGGGCTCGGGACCGTCAAGTCTGAAAAGGAAGAAGAGATGGCTTATGATAGCACGGCTATCCGACTTCGCTGTGGCGGTTCTCGCCAGAATTTTCCTTGGACTAATGTTATTGCTAAGGGGCCAAACTTCCAGAGCCAACAACATGGCCAAGAAGCTGTACTTGAGATGATAAGTGGTGGTTCATGGCAACCAAGATTCCAAGGATTTCATGGGGCGAATAATTATGGAAATACTGAATCAGGAATCTGTGGTCTCAACCTTTCTGCAATGCAGAAAAGGGGTGACTTCTCATGCAAGCTACTTTTCCGAAAGATGCTGACACAGAGCGATGTGGGTAGGTTGAATAGACTTGTCATCCCCAAGAAACATGCCACCACATGTTTCTCCGAAATCTCTAGAAGAATGGAAGAATATGCAAAAGCTGGCATTCGTGCTGATGAGCAGGTAGATTTCTTCGACAGGACGATGACGTCATGGAAGTTCCGGTACTGCTACTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGAGGTTGGATCAAGTTTGTGAGAGAGAATCGGTTGAATGTTAATGATGTTGTTGCCTTTTACTCATGTGAAGTCCAAAGAGAAGGAAAAATAGTGAACAAGTTCTTCATGATTGATCCTGAAAGAGGTGAAGGAAACTATGCTAGTAGCAGCAGATCAGTGATTGAAGATGCTAATCATCACAATGTTGGGTTGAAATCTGAAATGGGGAGTTCAGTTTTTGAAGGTTGTTCTTATCATCACCACCACCACCACCATGATGAGGTGAAATCTGAAGTGTGCTCTGATAATGATGAGAAGAGGCTTGGAAAGCGAGTGATGATGGATGTTGACCCGCCAAGCAATGTTGAGAGGAAAGGTTTCAGGCTCTTTGGGGTTCAAATCAACTGA 1158 0.4352 MLLLEWFCCRILMEENMSCKASSGVDNASIEGLDPNISCYSAYPNKHSGHCSKESVNKFKGIMPQQNGNWGSQMYSNGHQIGLGTVKSEKEEEMAYDSTAIRLRCGGSRQNFPWTNVIAKGPNFQSQQHGQEAVLEMISGGSWQPRFQGFHGANNYGNTESGICGLNLSAMQKRGDFSCKLLFRKMLTQSDVGRLNRLVIPKKHATTCFSEISRRMEEYAKAGIRADEQVDFFDRTMTSWKFRYCYWKSSQSYVFTRGWIKFVRENRLNVNDVVAFYSCEVQREGKIVNKFFMIDPERGEGNYASSSRSVIEDANHHNVGLKSEMGSSVFEGCSYHHHHHHHDEVKSEVCSDNDEKRLGKRVMMDVDPPSNVERKGFRLFGVQIN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0844 385 SMART B3_2 183 295 IPR003340 GO:0003677
Lele18g0844 385 SUPERFAMILY DNA-binding pseudobarrel domain 181 280 IPR015300 -
Lele18g0844 385 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
Lele18g0844 385 ProSiteProfiles B3 DNA-binding domain profile. 183 295 IPR003340 GO:0003677
Lele18g0844 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 384 IPR044800 GO:0003700
Lele18g0844 385 CDD B3_DNA 182 277 IPR003340 GO:0003677
Lele18g0844 385 SUPERFAMILY DNA-binding domain 58 114 IPR016177 GO:0003677
Lele18g0844 385 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Lele18g0844 385 Pfam B3 DNA binding domain 183 286 IPR003340 GO:0003677
Lele18g0844 385 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Lele18g0844 385 Gene3D - 173 295 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0844 Lele-ChrLele18 5294380 5295537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0844 58 384 RAV Transcription Factor Family AT1G50680 39.535 2.33e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele18g0844 B3 1.3e-21 CL0405