Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0843 ATGTCCAGAGGTGTTGCCGCCGACTCTGGGCTGCTTCAGATGCCCTTGTCTCTTGGTAACGACGTCGTTGACGGTTCCTCCTTCAAATCTCACATTCCGGCCGGCGACGGTATGTACAACGGGTTCGCCGGATCTATGCACGACGCGCATCAAGCTTCCAACCAAACTCAACATTTCCATCATCCTCAGGGGCAGAATTATGGAGCATCGGGACCGCCGGCGACGAACCAAGCCCCGGCGAACGGAGCTCCGGCGCAGCCAAAACAGAGGGTTAGGGCTCGGAGGGGTCAAGCGACGGACCCACACAGCATCGCTGAGAGGTTACGAAGGGAGAGAATTGCAGAAAGAATGAAGGCTCTGCAAGAACTGGTTCCCAATGCCAACAAGACGGACAAGGCTTCAATGCTGGACGAGATCATAGACTATGTCAAGTTCTTACAGCTCCAAGTGAAGGTTCTGAGCATGAGCAGATTGGGGGGCGGTGCTGCCGCTGTTGCTCCTCTTGTTGCTGAGGGAGGAGATGACTGCATCCAAACCACCGCCGCTCGCAACTCCAACAAAGGAAACCAAACGGCGTCCTCCTCCAACGACACCCTCGGCATGACGGAGCACCAGGTGGCTAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTTCAGGGGAAAGGTCTCTGTCTCATGCCCATCTCCCTCGCCACCGCCATCTCCACAGCCACGTGTCCGTCCCAGAACCCCTTGGCCCCTGCCTCCGCCGACAACAACCACCACCCGGCCGTGGCGTCCAACGGAAACGGAGGGGAAGGGCCGTCGTCCCCCAGCATGTCGGTGTTGACCGTCCAGTCCGCCACGGCGGTTAACGACGGCGCCGTTAAAGACGCCGCCTCCGTCTCGAAGCCGTGA 906 0.5916 MSRGVAADSGLLQMPLSLGNDVVDGSSFKSHIPAGDGMYNGFAGSMHDAHQASNQTQHFHHPQGQNYGASGPPATNQAPANGAPAQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGGAAAVAPLVAEGGDDCIQTTAARNSNKGNQTASSSNDTLGMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCPSQNPLAPASADNNHHPAVASNGNGGEGPSSPSMSVLTVQSATAVNDGAVKDAASVSKP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0843 301 SMART finulus 103 152 IPR011598 GO:0046983
Lele18g0843 301 MobiDBLite consensus disorder prediction 43 103 - -
Lele18g0843 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983
Lele18g0843 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 156 IPR036638 GO:0046983
Lele18g0843 301 Gene3D - 92 154 IPR036638 GO:0046983
Lele18g0843 301 FunFam Transcription factor bHLH66 94 159 - -
Lele18g0843 301 MobiDBLite consensus disorder prediction 47 83 - -
Lele18g0843 301 MobiDBLite consensus disorder prediction 248 278 - -
Lele18g0843 301 Pfam Helix-loop-helix DNA-binding domain 102 147 IPR011598 GO:0046983
Lele18g0843 301 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0843 Lele-ChrLele18 5274953 5277318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0843 83 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.106 8.29e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele18g0843 HLH 9.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0843 18 5274953 5277318 Lele19g0873 19 5294639 5296984 hybridization
Lele18g0843 18 5274953 5277318 Lele20g0578 20 13253947 13258138 hybridization